Results 41 - 50 of 50 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9370 | 5' | -57 | NC_002512.2 | + | 150382 | 0.67 | 0.924049 |
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Target: 5'- cUCGGAGUGAGaggcGUC-CCCCCUCccCGa -3' miRNA: 3'- -GGCCUCGUUC----CAGuGGGGGAGuuGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 210677 | 0.67 | 0.924049 |
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Target: 5'- cCUGGuccaagcgcaacGGCAAGGcgccgcgggagaUCACCCgcuuCCUCAGCGUc -3' miRNA: 3'- -GGCC------------UCGUUCC------------AGUGGG----GGAGUUGCA- -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 200096 | 0.66 | 0.934067 |
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Target: 5'- cCCGucGCGGGGUCGCCgggguaCUUCAGCa- -3' miRNA: 3'- -GGCcuCGUUCCAGUGGg-----GGAGUUGca -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 190947 | 0.66 | 0.938745 |
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Target: 5'- cCCGGGcGCAcgcGGG-CGCCCgCCgCGGCGg -3' miRNA: 3'- -GGCCU-CGU---UCCaGUGGG-GGaGUUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 127762 | 0.66 | 0.943205 |
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Target: 5'- aCGGc-CAGGGUC-CCCCUcCGACGg -3' miRNA: 3'- gGCCucGUUCCAGuGGGGGaGUUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 127566 | 0.66 | 0.943205 |
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Target: 5'- aCCGGAGCcGGccCAgCCgCUCGGCGa -3' miRNA: 3'- -GGCCUCGuUCcaGUgGGgGAGUUGCa -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 187125 | 0.66 | 0.947448 |
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Target: 5'- aCCaGGGGCAGGGgCugCCCCUg----- -3' miRNA: 3'- -GG-CCUCGUUCCaGugGGGGAguugca -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 106257 | 0.66 | 0.947448 |
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Target: 5'- cCCGGgugagGGUGAGGUCccACCUCCg-GACGUg -3' miRNA: 3'- -GGCC-----UCGUUCCAG--UGGGGGagUUGCA- -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 211886 | 0.66 | 0.947448 |
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Target: 5'- cCUGGAGC-GGGUCACCUUC-CGgggcugccGCGUc -3' miRNA: 3'- -GGCCUCGuUCCAGUGGGGGaGU--------UGCA- -5' |
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| 9370 | 5' | -57 | NC_002512.2 | + | 215187 | 0.66 | 0.947448 |
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Target: 5'- -gGGAGCGgacgcGGGUCuACCUCUUCGucgGCGg -3' miRNA: 3'- ggCCUCGU-----UCCAG-UGGGGGAGU---UGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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