miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 228206 0.71 0.699278
Target:  5'- uUCGAGGCCG-CGGUCGAG-GCcgGGCGa -3'
miRNA:   3'- -GGUUCCGGUaGCCGGUUCuCG--UCGCa -5'
9371 5' -56.9 NC_002512.2 + 227984 0.67 0.905959
Target:  5'- cCCGGcGCCGagGGCCGAGGGCcggAGCc- -3'
miRNA:   3'- -GGUUcCGGUagCCGGUUCUCG---UCGca -5'
9371 5' -56.9 NC_002512.2 + 227565 0.67 0.886917
Target:  5'- aCCGAGGCCucCGGaCCGccGGcGCAGCa- -3'
miRNA:   3'- -GGUUCCGGuaGCC-GGU--UCuCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 227462 0.67 0.905959
Target:  5'- gCCGGGGgaga-GGCCGGGGGCGGCc- -3'
miRNA:   3'- -GGUUCCgguagCCGGUUCUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 227218 0.66 0.923005
Target:  5'- aCCAggAGGCgG-CGGaCCGGGAggcGCGGCGg -3'
miRNA:   3'- -GGU--UCCGgUaGCC-GGUUCU---CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 226950 0.68 0.857821
Target:  5'- gCCAAGGCCGcgcgggaGGCCAAGaAGCuguccaaGGUGg -3'
miRNA:   3'- -GGUUCCGGUag-----CCGGUUC-UCG-------UCGCa -5'
9371 5' -56.9 NC_002512.2 + 226690 0.68 0.873152
Target:  5'- gCC-GGGCCGUCGcCCGc-GGCGGCGUc -3'
miRNA:   3'- -GGuUCCGGUAGCcGGUucUCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 225784 0.69 0.784122
Target:  5'- cCCGAGGCUgcgcCGGCCGGGccgcgGGCGGCc- -3'
miRNA:   3'- -GGUUCCGGua--GCCGGUUC-----UCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 223876 0.68 0.865231
Target:  5'- -gGAGGCCGaggaggaGGCCGaggaggaggagcgGGAGCGGCGc -3'
miRNA:   3'- ggUUCCGGUag-----CCGGU-------------UCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 222877 0.68 0.865231
Target:  5'- gCAAGGCCcugCGGCUcuccugcgacuucGAGGGCuccuGCGUc -3'
miRNA:   3'- gGUUCCGGua-GCCGG-------------UUCUCGu---CGCA- -5'
9371 5' -56.9 NC_002512.2 + 221426 0.66 0.927207
Target:  5'- uCCGAcGGCCGccaugcggaccgCGGCCGGGGcGCGGuCGUc -3'
miRNA:   3'- -GGUU-CCGGUa-----------GCCGGUUCU-CGUC-GCA- -5'
9371 5' -56.9 NC_002512.2 + 221297 0.73 0.610062
Target:  5'- -gGAGGCCgggGUCGGCgGGGAGCGG-GUa -3'
miRNA:   3'- ggUUCCGG---UAGCCGgUUCUCGUCgCA- -5'
9371 5' -56.9 NC_002512.2 + 221239 0.71 0.709031
Target:  5'- -uGAGGUCgAUCGGCCGGccGCGGCGg -3'
miRNA:   3'- ggUUCCGG-UAGCCGGUUcuCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 220974 0.71 0.709031
Target:  5'- gCCGAGGCCGcccUGGCCAGGAGgGuCGa -3'
miRNA:   3'- -GGUUCCGGUa--GCCGGUUCUCgUcGCa -5'
9371 5' -56.9 NC_002512.2 + 218294 0.68 0.858571
Target:  5'- cUCGGGGUCccCGGCCcuGGGCGGCc- -3'
miRNA:   3'- -GGUUCCGGuaGCCGGuuCUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 217782 0.69 0.827133
Target:  5'- gCCGGGGUCG-CGGCCGgcuggcGGAuCGGCGUc -3'
miRNA:   3'- -GGUUCCGGUaGCCGGU------UCUcGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 217602 0.71 0.718723
Target:  5'- uCgGGGGUCGUCGGCgAcucGGGCGGCGc -3'
miRNA:   3'- -GgUUCCGGUAGCCGgUu--CUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 216209 0.66 0.938018
Target:  5'- gCCGcGGCCGUCGccucguCCGGGAGCuggagccgcGGCGa -3'
miRNA:   3'- -GGUuCCGGUAGCc-----GGUUCUCG---------UCGCa -5'
9371 5' -56.9 NC_002512.2 + 213000 0.68 0.850987
Target:  5'- gCCGcGGCCGUCGGgcCCGGggcccucucGAGguGCGUc -3'
miRNA:   3'- -GGUuCCGGUAGCC--GGUU---------CUCguCGCA- -5'
9371 5' -56.9 NC_002512.2 + 210168 0.66 0.923005
Target:  5'- aCAgcGGGCCGUUcauCCAGGAGCAcuGCGUc -3'
miRNA:   3'- gGU--UCCGGUAGcc-GGUUCUCGU--CGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.