miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 9131 0.66 0.923005
Target:  5'- aCCGuGGUC-UCGGUCAccGAGCAGCu- -3'
miRNA:   3'- -GGUuCCGGuAGCCGGUu-CUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 32910 0.66 0.917548
Target:  5'- aCUggGGCCGauUCgaguaccuggaGGCCGucGAGCAGCa- -3'
miRNA:   3'- -GGuuCCGGU--AG-----------CCGGUu-CUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 59471 0.68 0.873152
Target:  5'- uCCGAGGCCcUC-GCCAGcgggucucGAGCGGCc- -3'
miRNA:   3'- -GGUUCCGGuAGcCGGUU--------CUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 74377 0.67 0.893482
Target:  5'- aUCGAGGUCGaccaGGUCuuccagGAGAGCGGCGg -3'
miRNA:   3'- -GGUUCCGGUag--CCGG------UUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 74597 0.66 0.928236
Target:  5'- gCCGGGGCCcuccGUCGGCUc-GAGCcGCc- -3'
miRNA:   3'- -GGUUCCGG----UAGCCGGuuCUCGuCGca -5'
9371 5' -56.9 NC_002512.2 + 79241 0.68 0.843215
Target:  5'- -aGAGGCCGUCGGCCGccGGCcucucccgauuuGGCa- -3'
miRNA:   3'- ggUUCCGGUAGCCGGUucUCG------------UCGca -5'
9371 5' -56.9 NC_002512.2 + 82076 0.75 0.484383
Target:  5'- cCCGAGGCUcUCGaGCCAcGGGCGcGCGUa -3'
miRNA:   3'- -GGUUCCGGuAGC-CGGUuCUCGU-CGCA- -5'
9371 5' -56.9 NC_002512.2 + 90088 0.71 0.728344
Target:  5'- aCCGAGGCCcccgcCGGCCuGGAgGguGCGc -3'
miRNA:   3'- -GGUUCCGGua---GCCGGuUCU-CguCGCa -5'
9371 5' -56.9 NC_002512.2 + 90511 0.7 0.7751
Target:  5'- gCCGAGGCCGgcggCGGacgaCGGGAacGCGGUGg -3'
miRNA:   3'- -GGUUCCGGUa---GCCg---GUUCU--CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 90650 0.68 0.865961
Target:  5'- gCCGcGGCCG-CGGUCucGGAGuCGGCGg -3'
miRNA:   3'- -GGUuCCGGUaGCCGGu-UCUC-GUCGCa -5'
9371 5' -56.9 NC_002512.2 + 90686 0.68 0.863765
Target:  5'- gCCAGGGCCAgguccucgacggcgUCGGCgugaCAGGGGUccaccauguGGCGg -3'
miRNA:   3'- -GGUUCCGGU--------------AGCCG----GUUCUCG---------UCGCa -5'
9371 5' -56.9 NC_002512.2 + 91868 0.73 0.580341
Target:  5'- cCCGAGGCCGccgucCGGCgCGGGcGGCGGCGc -3'
miRNA:   3'- -GGUUCCGGUa----GCCG-GUUC-UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 92576 0.76 0.430554
Target:  5'- gCCGAcGCCG-CGGCCGGGAGgGGCGg -3'
miRNA:   3'- -GGUUcCGGUaGCCGGUUCUCgUCGCa -5'
9371 5' -56.9 NC_002512.2 + 94117 0.68 0.858571
Target:  5'- gCCA--GCCucucGUCGGCCAGGAcgcggaugacGCGGCGg -3'
miRNA:   3'- -GGUucCGG----UAGCCGGUUCU----------CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 94454 0.69 0.80177
Target:  5'- ---cGGCC-UCGGCCAGGaAGCgaccGGCGg -3'
miRNA:   3'- gguuCCGGuAGCCGGUUC-UCG----UCGCa -5'
9371 5' -56.9 NC_002512.2 + 95835 0.75 0.475181
Target:  5'- gCGAcGGCCcgCaggaGGCCGGGGGCGGCGUc -3'
miRNA:   3'- gGUU-CCGGuaG----CCGGUUCUCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 96210 0.69 0.818837
Target:  5'- gCGAGGUCGgccacggCGGCCGc-GGCGGCGg -3'
miRNA:   3'- gGUUCCGGUa------GCCGGUucUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 98810 0.66 0.911865
Target:  5'- cCCGGcGGCCGgagcgacggaUCGGCCuccGGcGCGGCGc -3'
miRNA:   3'- -GGUU-CCGGU----------AGCCGGu--UCuCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 101420 0.68 0.850987
Target:  5'- uCCGAGGgCAcagcggCGGCCGgcGGcGCGGCGa -3'
miRNA:   3'- -GGUUCCgGUa-----GCCGGU--UCuCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 103305 0.7 0.756702
Target:  5'- ---cGGCCGUcguaggacaggaCGGCCGAGgcccgGGCGGCGUa -3'
miRNA:   3'- gguuCCGGUA------------GCCGGUUC-----UCGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.