miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 106718 0.71 0.689472
Target:  5'- gCCucGGCC-UCGGCCuc-GGCGGCGa -3'
miRNA:   3'- -GGuuCCGGuAGCCGGuucUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 107001 0.81 0.237476
Target:  5'- gCCcGGGCCgggGUCGGCCGAGAGCcgGGCGc -3'
miRNA:   3'- -GGuUCCGG---UAGCCGGUUCUCG--UCGCa -5'
9371 5' -56.9 NC_002512.2 + 107206 0.74 0.521998
Target:  5'- aCCAgccGGGCCG-CGGCCGgGGAGCcGCGg -3'
miRNA:   3'- -GGU---UCCGGUaGCCGGU-UCUCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 108433 0.76 0.429686
Target:  5'- cCCGGGGCCGggGGCCGGGgggucccuccccgGGCGGCGc -3'
miRNA:   3'- -GGUUCCGGUagCCGGUUC-------------UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 109709 0.66 0.917548
Target:  5'- -gGAGGCCGUgcugaucaCGGaCGAGAGCcGCGa -3'
miRNA:   3'- ggUUCCGGUA--------GCCgGUUCUCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 110708 0.72 0.62001
Target:  5'- gCCAGGGCCAgcugcauggcgUUGGCCAGG-GCcGUGUu -3'
miRNA:   3'- -GGUUCCGGU-----------AGCCGGUUCuCGuCGCA- -5'
9371 5' -56.9 NC_002512.2 + 112901 0.68 0.835261
Target:  5'- ---cGGCCGUCGGCCcgcccGGAcGgGGCGUc -3'
miRNA:   3'- gguuCCGGUAGCCGGu----UCU-CgUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 113249 0.67 0.880139
Target:  5'- gCAGGaGCC-UCGGCagCGAGGGgGGCGg -3'
miRNA:   3'- gGUUC-CGGuAGCCG--GUUCUCgUCGCa -5'
9371 5' -56.9 NC_002512.2 + 113920 0.69 0.827133
Target:  5'- aCGAGGCgGacguuccacUCGGCCAgcgAGAGCAggccGCGg -3'
miRNA:   3'- gGUUCCGgU---------AGCCGGU---UCUCGU----CGCa -5'
9371 5' -56.9 NC_002512.2 + 114006 0.72 0.639924
Target:  5'- cCCGccGCCGUCGGCCcc--GCAGCGg -3'
miRNA:   3'- -GGUucCGGUAGCCGGuucuCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 114125 0.69 0.793015
Target:  5'- gCAcGGCCAcCGGuCCgAGGAGCAGCc- -3'
miRNA:   3'- gGUuCCGGUaGCC-GG-UUCUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 114189 0.66 0.911865
Target:  5'- gCCGgcgucGGGCCcggCGGCCAuGAGgaGGCGg -3'
miRNA:   3'- -GGU-----UCCGGua-GCCGGUuCUCg-UCGCa -5'
9371 5' -56.9 NC_002512.2 + 120932 0.68 0.835261
Target:  5'- aCCcGGGCgAcccgaCGGgCAAGGGCGGCGg -3'
miRNA:   3'- -GGuUCCGgUa----GCCgGUUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 121150 0.7 0.747342
Target:  5'- gCCGAGacGCCGgccgCGGCCcAGGGCgaGGCGUu -3'
miRNA:   3'- -GGUUC--CGGUa---GCCGGuUCUCG--UCGCA- -5'
9371 5' -56.9 NC_002512.2 + 122103 0.67 0.880139
Target:  5'- gCGAGGUCggcgcugacGUCGGCCGcgcuGGA-CAGCGUg -3'
miRNA:   3'- gGUUCCGG---------UAGCCGGU----UCUcGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 123155 0.7 0.737887
Target:  5'- gCCGGGGCCGaggaggCGGaCAGGAGC-GCGg -3'
miRNA:   3'- -GGUUCCGGUa-----GCCgGUUCUCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 124319 0.66 0.938018
Target:  5'- aUCGGGGCCG-CGGCgGAcGuGCuGCGg -3'
miRNA:   3'- -GGUUCCGGUaGCCGgUU-CuCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 127247 0.68 0.850987
Target:  5'- aCCGAGGCgA-CGGCC-GGAaCGGCGa -3'
miRNA:   3'- -GGUUCCGgUaGCCGGuUCUcGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 130192 0.69 0.827133
Target:  5'- aCgAGGGCCcgucgcaugAUCGGCCAguGGuccucGGCGGCGg -3'
miRNA:   3'- -GgUUCCGG---------UAGCCGGU--UC-----UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 131146 0.73 0.600131
Target:  5'- gCGGGGCagggCGGCCGAGAGgaAGCGg -3'
miRNA:   3'- gGUUCCGgua-GCCGGUUCUCg-UCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.