Results 21 - 40 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 221239 | 0.71 | 0.709031 |
Target: 5'- -uGAGGUCgAUCGGCCGGccGCGGCGg -3' miRNA: 3'- ggUUCCGG-UAGCCGGUUcuCGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 220974 | 0.71 | 0.709031 |
Target: 5'- gCCGAGGCCGcccUGGCCAGGAGgGuCGa -3' miRNA: 3'- -GGUUCCGGUa--GCCGGUUCUCgUcGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 217602 | 0.71 | 0.718723 |
Target: 5'- uCgGGGGUCGUCGGCgAcucGGGCGGCGc -3' miRNA: 3'- -GgUUCCGGUAGCCGgUu--CUCGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 90088 | 0.71 | 0.728344 |
Target: 5'- aCCGAGGCCcccgcCGGCCuGGAgGguGCGc -3' miRNA: 3'- -GGUUCCGGua---GCCGGuUCU-CguCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 123155 | 0.7 | 0.737887 |
Target: 5'- gCCGGGGCCGaggaggCGGaCAGGAGC-GCGg -3' miRNA: 3'- -GGUUCCGGUa-----GCCgGUUCUCGuCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 121150 | 0.7 | 0.747342 |
Target: 5'- gCCGAGacGCCGgccgCGGCCcAGGGCgaGGCGUu -3' miRNA: 3'- -GGUUC--CGGUa---GCCGGuUCUCG--UCGCA- -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 153064 | 0.7 | 0.756702 |
Target: 5'- cCCGgucGGGUCggCGGUCGAG-GCGGCGa -3' miRNA: 3'- -GGU---UCCGGuaGCCGGUUCuCGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 103305 | 0.7 | 0.756702 |
Target: 5'- ---cGGCCGUcguaggacaggaCGGCCGAGgcccgGGCGGCGUa -3' miRNA: 3'- gguuCCGGUA------------GCCGGUUC-----UCGUCGCA- -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 195749 | 0.7 | 0.772369 |
Target: 5'- uCCGAGGUCGUCGGCCGgauccuggggaccaAcguGAGCcuggacgugGGCGUg -3' miRNA: 3'- -GGUUCCGGUAGCCGGU--------------U---CUCG---------UCGCA- -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 90511 | 0.7 | 0.7751 |
Target: 5'- gCCGAGGCCGgcggCGGacgaCGGGAacGCGGUGg -3' miRNA: 3'- -GGUUCCGGUa---GCCg---GUUCU--CGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 154693 | 0.7 | 0.7751 |
Target: 5'- uCCGAgcGGCCGUcCGGCgucGAGCGGCGc -3' miRNA: 3'- -GGUU--CCGGUA-GCCGguuCUCGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 205048 | 0.7 | 0.778724 |
Target: 5'- gCCGAccGGCCGcgGGCCcggaccuacuggcugGAGAGCGGCGg -3' miRNA: 3'- -GGUU--CCGGUagCCGG---------------UUCUCGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 225784 | 0.69 | 0.784122 |
Target: 5'- cCCGAGGCUgcgcCGGCCGGGccgcgGGCGGCc- -3' miRNA: 3'- -GGUUCCGGua--GCCGGUUC-----UCGUCGca -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 208560 | 0.69 | 0.784122 |
Target: 5'- gCAGGGCggugCGUCaGGCCGAGucgacgcGCAGCGg -3' miRNA: 3'- gGUUCCG----GUAG-CCGGUUCu------CGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 132576 | 0.69 | 0.784122 |
Target: 5'- cCCGgcGGGCg--CGGCCAGGGGUucGGCGa -3' miRNA: 3'- -GGU--UCCGguaGCCGGUUCUCG--UCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 201862 | 0.69 | 0.784122 |
Target: 5'- cCUggGGCCugCGGuCCGAGgacGGCGGCGg -3' miRNA: 3'- -GGuuCCGGuaGCC-GGUUC---UCGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 114125 | 0.69 | 0.793015 |
Target: 5'- gCAcGGCCAcCGGuCCgAGGAGCAGCc- -3' miRNA: 3'- gGUuCCGGUaGCC-GG-UUCUCGUCGca -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 94454 | 0.69 | 0.80177 |
Target: 5'- ---cGGCC-UCGGCCAGGaAGCgaccGGCGg -3' miRNA: 3'- gguuCCGGuAGCCGGUUC-UCG----UCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 96210 | 0.69 | 0.818837 |
Target: 5'- gCGAGGUCGgccacggCGGCCGc-GGCGGCGg -3' miRNA: 3'- gGUUCCGGUa------GCCGGUucUCGUCGCa -5' |
|||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 171854 | 0.69 | 0.818837 |
Target: 5'- ---cGGCCG-CGGCCGGGAgGgGGCGg -3' miRNA: 3'- gguuCCGGUaGCCGGUUCU-CgUCGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home