miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 139162 0.66 0.911865
Target:  5'- uUCGAGGCCGUCuuGCCGcacucuAGGGcCAGCa- -3'
miRNA:   3'- -GGUUCCGGUAGc-CGGU------UCUC-GUCGca -5'
9371 5' -56.9 NC_002512.2 + 200301 0.66 0.911865
Target:  5'- aCUggGGCuCGUCcGCCcucgGGGAGCGGCu- -3'
miRNA:   3'- -GGuuCCG-GUAGcCGG----UUCUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 183479 0.67 0.908348
Target:  5'- aCCAAGGCCGUgcugcgggccgccuaCGGCCGcGAGgGGg-- -3'
miRNA:   3'- -GGUUCCGGUA---------------GCCGGUuCUCgUCgca -5'
9371 5' -56.9 NC_002512.2 + 227462 0.67 0.905959
Target:  5'- gCCGGGGgaga-GGCCGGGGGCGGCc- -3'
miRNA:   3'- -GGUUCCgguagCCGGUUCUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 143897 0.67 0.905959
Target:  5'- cUCGAGGCUGUCGucguCCGAGAG-GGCGa -3'
miRNA:   3'- -GGUUCCGGUAGCc---GGUUCUCgUCGCa -5'
9371 5' -56.9 NC_002512.2 + 227984 0.67 0.905959
Target:  5'- cCCGGcGCCGagGGCCGAGGGCcggAGCc- -3'
miRNA:   3'- -GGUUcCGGUagCCGGUUCUCG---UCGca -5'
9371 5' -56.9 NC_002512.2 + 197804 0.67 0.89983
Target:  5'- cCCGGGccGCCAUCGGCgAcccccccugccGGAGguGCa- -3'
miRNA:   3'- -GGUUC--CGGUAGCCGgU-----------UCUCguCGca -5'
9371 5' -56.9 NC_002512.2 + 156455 0.67 0.89983
Target:  5'- uCCGGGGgCggCGGgggacUCGGGGGCGGCGg -3'
miRNA:   3'- -GGUUCCgGuaGCC-----GGUUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 188547 0.67 0.89983
Target:  5'- aCC-AGGCCAacUCGGgCAGcuccGGCGGCGa -3'
miRNA:   3'- -GGuUCCGGU--AGCCgGUUc---UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 200385 0.67 0.899205
Target:  5'- gCgGGGGCUGcaggaucUCGGCCGggagGGAGCAGaCGg -3'
miRNA:   3'- -GgUUCCGGU-------AGCCGGU----UCUCGUC-GCa -5'
9371 5' -56.9 NC_002512.2 + 74377 0.67 0.893482
Target:  5'- aUCGAGGUCGaccaGGUCuuccagGAGAGCGGCGg -3'
miRNA:   3'- -GGUUCCGGUag--CCGG------UUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 227565 0.67 0.886917
Target:  5'- aCCGAGGCCucCGGaCCGccGGcGCAGCa- -3'
miRNA:   3'- -GGUUCCGGuaGCC-GGU--UCuCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 158307 0.67 0.880139
Target:  5'- cCCAAGGCCG-CGGUCGuccGGC-GCGa -3'
miRNA:   3'- -GGUUCCGGUaGCCGGUuc-UCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 122103 0.67 0.880139
Target:  5'- gCGAGGUCggcgcugacGUCGGCCGcgcuGGA-CAGCGUg -3'
miRNA:   3'- gGUUCCGG---------UAGCCGGU----UCUcGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 181573 0.67 0.880139
Target:  5'- gUggGGuCCGUcugCGGCggCAGGGGCGGCGg -3'
miRNA:   3'- gGuuCC-GGUA---GCCG--GUUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 113249 0.67 0.880139
Target:  5'- gCAGGaGCC-UCGGCagCGAGGGgGGCGg -3'
miRNA:   3'- gGUUC-CGGuAGCCG--GUUCUCgUCGCa -5'
9371 5' -56.9 NC_002512.2 + 158943 0.68 0.873152
Target:  5'- gCCGGcGGCCucUCGGUCAGcaacGGCGGCGa -3'
miRNA:   3'- -GGUU-CCGGu-AGCCGGUUc---UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 226690 0.68 0.873152
Target:  5'- gCC-GGGCCGUCGcCCGc-GGCGGCGUc -3'
miRNA:   3'- -GGuUCCGGUAGCcGGUucUCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 59471 0.68 0.873152
Target:  5'- uCCGAGGCCcUC-GCCAGcgggucucGAGCGGCc- -3'
miRNA:   3'- -GGUUCCGGuAGcCGGUU--------CUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 90650 0.68 0.865961
Target:  5'- gCCGcGGCCG-CGGUCucGGAGuCGGCGg -3'
miRNA:   3'- -GGUuCCGGUaGCCGGu-UCUC-GUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.