Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 223876 | 0.68 | 0.865231 |
Target: 5'- -gGAGGCCGaggaggaGGCCGaggaggaggagcgGGAGCGGCGc -3' miRNA: 3'- ggUUCCGGUag-----CCGGU-------------UCUCGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 222877 | 0.68 | 0.865231 |
Target: 5'- gCAAGGCCcugCGGCUcuccugcgacuucGAGGGCuccuGCGUc -3' miRNA: 3'- gGUUCCGGua-GCCGG-------------UUCUCGu---CGCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 154405 | 0.68 | 0.865231 |
Target: 5'- uCgGAGGCgAUCGGgguCCGAGgcaagauGGCGGCGUc -3' miRNA: 3'- -GgUUCCGgUAGCC---GGUUC-------UCGUCGCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 90686 | 0.68 | 0.863765 |
Target: 5'- gCCAGGGCCAgguccucgacggcgUCGGCgugaCAGGGGUccaccauguGGCGg -3' miRNA: 3'- -GGUUCCGGU--------------AGCCG----GUUCUCG---------UCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 94117 | 0.68 | 0.858571 |
Target: 5'- gCCA--GCCucucGUCGGCCAGGAcgcggaugacGCGGCGg -3' miRNA: 3'- -GGUucCGG----UAGCCGGUUCU----------CGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 218294 | 0.68 | 0.858571 |
Target: 5'- cUCGGGGUCccCGGCCcuGGGCGGCc- -3' miRNA: 3'- -GGUUCCGGuaGCCGGuuCUCGUCGca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 201459 | 0.68 | 0.858571 |
Target: 5'- cUCGAGGugguccCCGUCGGCCGGGGuGCAGa-- -3' miRNA: 3'- -GGUUCC------GGUAGCCGGUUCU-CGUCgca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 226950 | 0.68 | 0.857821 |
Target: 5'- gCCAAGGCCGcgcgggaGGCCAAGaAGCuguccaaGGUGg -3' miRNA: 3'- -GGUUCCGGUag-----CCGGUUC-UCG-------UCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 213000 | 0.68 | 0.850987 |
Target: 5'- gCCGcGGCCGUCGGgcCCGGggcccucucGAGguGCGUc -3' miRNA: 3'- -GGUuCCGGUAGCC--GGUU---------CUCguCGCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 127247 | 0.68 | 0.850987 |
Target: 5'- aCCGAGGCgA-CGGCC-GGAaCGGCGa -3' miRNA: 3'- -GGUUCCGgUaGCCGGuUCUcGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 101420 | 0.68 | 0.850987 |
Target: 5'- uCCGAGGgCAcagcggCGGCCGgcGGcGCGGCGa -3' miRNA: 3'- -GGUUCCgGUa-----GCCGGU--UCuCGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 79241 | 0.68 | 0.843215 |
Target: 5'- -aGAGGCCGUCGGCCGccGGCcucucccgauuuGGCa- -3' miRNA: 3'- ggUUCCGGUAGCCGGUucUCG------------UCGca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 149512 | 0.68 | 0.843215 |
Target: 5'- -aAAGGCCG-CGGCCG-GAGCGGg-- -3' miRNA: 3'- ggUUCCGGUaGCCGGUuCUCGUCgca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 112901 | 0.68 | 0.835261 |
Target: 5'- ---cGGCCGUCGGCCcgcccGGAcGgGGCGUc -3' miRNA: 3'- gguuCCGGUAGCCGGu----UCU-CgUCGCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 120932 | 0.68 | 0.835261 |
Target: 5'- aCCcGGGCgAcccgaCGGgCAAGGGCGGCGg -3' miRNA: 3'- -GGuUCCGgUa----GCCgGUUCUCGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 113920 | 0.69 | 0.827133 |
Target: 5'- aCGAGGCgGacguuccacUCGGCCAgcgAGAGCAggccGCGg -3' miRNA: 3'- gGUUCCGgU---------AGCCGGU---UCUCGU----CGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 217782 | 0.69 | 0.827133 |
Target: 5'- gCCGGGGUCG-CGGCCGgcuggcGGAuCGGCGUc -3' miRNA: 3'- -GGUUCCGGUaGCCGGU------UCUcGUCGCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 205377 | 0.69 | 0.827133 |
Target: 5'- -gAAGGCgGUCaGGcCCAGGAagGCGGCGg -3' miRNA: 3'- ggUUCCGgUAG-CC-GGUUCU--CGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 196146 | 0.69 | 0.827133 |
Target: 5'- uCCAGGGCCGcuccucgcucCGGUCGAcGAGgGGCGa -3' miRNA: 3'- -GGUUCCGGUa---------GCCGGUU-CUCgUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 130192 | 0.69 | 0.827133 |
Target: 5'- aCgAGGGCCcgucgcaugAUCGGCCAguGGuccucGGCGGCGg -3' miRNA: 3'- -GgUUCCGG---------UAGCCGGU--UC-----UCGUCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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