Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9371 | 5' | -56.9 | NC_002512.2 | + | 216209 | 0.66 | 0.938018 |
Target: 5'- gCCGcGGCCGUCGccucguCCGGGAGCuggagccgcGGCGa -3' miRNA: 3'- -GGUuCCGGUAGCc-----GGUUCUCG---------UCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 124319 | 0.66 | 0.938018 |
Target: 5'- aUCGGGGCCG-CGGCgGAcGuGCuGCGg -3' miRNA: 3'- -GGUUCCGGUaGCCGgUU-CuCGuCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 152741 | 0.66 | 0.938018 |
Target: 5'- -aGAGGCguUcCGGCCGGGAGCccGGuCGa -3' miRNA: 3'- ggUUCCGguA-GCCGGUUCUCG--UC-GCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 167498 | 0.66 | 0.93324 |
Target: 5'- aCGAGGCCGU-GuCCGAGGGCGccauGCGg -3' miRNA: 3'- gGUUCCGGUAgCcGGUUCUCGU----CGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 164507 | 0.66 | 0.93324 |
Target: 5'- cCCAGGGgaAgcgCGGuaacgugaCCAAGGGCGGCGa -3' miRNA: 3'- -GGUUCCggUa--GCC--------GGUUCUCGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 204132 | 0.66 | 0.931762 |
Target: 5'- uCCAGGGCCucuacgaccuggcgGccuaucucUCGGCUAAGgacGGCAGCa- -3' miRNA: 3'- -GGUUCCGG--------------U--------AGCCGGUUC---UCGUCGca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 74597 | 0.66 | 0.928236 |
Target: 5'- gCCGGGGCCcuccGUCGGCUc-GAGCcGCc- -3' miRNA: 3'- -GGUUCCGG----UAGCCGGuuCUCGuCGca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 132031 | 0.66 | 0.927723 |
Target: 5'- gCGAcGUCGUCGGCCAGGgaccggaGGguGCGc -3' miRNA: 3'- gGUUcCGGUAGCCGGUUC-------UCguCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 221426 | 0.66 | 0.927207 |
Target: 5'- uCCGAcGGCCGccaugcggaccgCGGCCGGGGcGCGGuCGUc -3' miRNA: 3'- -GGUU-CCGGUa-----------GCCGGUUCU-CGUC-GCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 210168 | 0.66 | 0.923005 |
Target: 5'- aCAgcGGGCCGUUcauCCAGGAGCAcuGCGUc -3' miRNA: 3'- gGU--UCCGGUAGcc-GGUUCUCGU--CGCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 139853 | 0.66 | 0.923005 |
Target: 5'- gCGAGGCCA--GGCCAcacaGGA-CGGCGa -3' miRNA: 3'- gGUUCCGGUagCCGGU----UCUcGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 9131 | 0.66 | 0.923005 |
Target: 5'- aCCGuGGUC-UCGGUCAccGAGCAGCu- -3' miRNA: 3'- -GGUuCCGGuAGCCGGUu-CUCGUCGca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 227218 | 0.66 | 0.923005 |
Target: 5'- aCCAggAGGCgG-CGGaCCGGGAggcGCGGCGg -3' miRNA: 3'- -GGU--UCCGgUaGCC-GGUUCU---CGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 32910 | 0.66 | 0.917548 |
Target: 5'- aCUggGGCCGauUCgaguaccuggaGGCCGucGAGCAGCa- -3' miRNA: 3'- -GGuuCCGGU--AG-----------CCGGUu-CUCGUCGca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 109709 | 0.66 | 0.917548 |
Target: 5'- -gGAGGCCGUgcugaucaCGGaCGAGAGCcGCGa -3' miRNA: 3'- ggUUCCGGUA--------GCCgGUUCUCGuCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 143731 | 0.66 | 0.917548 |
Target: 5'- gCAGGGCCucggaggCGGCC----GCGGCGUc -3' miRNA: 3'- gGUUCCGGua-----GCCGGuucuCGUCGCA- -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 166185 | 0.66 | 0.917548 |
Target: 5'- aCAAGGagaucCCcgUGGCCuucuuGGGCGGCGa -3' miRNA: 3'- gGUUCC-----GGuaGCCGGuu---CUCGUCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 139162 | 0.66 | 0.911865 |
Target: 5'- uUCGAGGCCGUCuuGCCGcacucuAGGGcCAGCa- -3' miRNA: 3'- -GGUUCCGGUAGc-CGGU------UCUC-GUCGca -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 114189 | 0.66 | 0.911865 |
Target: 5'- gCCGgcgucGGGCCcggCGGCCAuGAGgaGGCGg -3' miRNA: 3'- -GGU-----UCCGGua-GCCGGUuCUCg-UCGCa -5' |
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9371 | 5' | -56.9 | NC_002512.2 | + | 98810 | 0.66 | 0.911865 |
Target: 5'- cCCGGcGGCCGgagcgacggaUCGGCCuccGGcGCGGCGc -3' miRNA: 3'- -GGUU-CCGGU----------AGCCGGu--UCuCGUCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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