miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 107001 0.81 0.237476
Target:  5'- gCCcGGGCCgggGUCGGCCGAGAGCcgGGCGc -3'
miRNA:   3'- -GGuUCCGG---UAGCCGGUUCUCG--UCGCa -5'
9371 5' -56.9 NC_002512.2 + 108433 0.76 0.429686
Target:  5'- cCCGGGGCCGggGGCCGGGgggucccuccccgGGCGGCGc -3'
miRNA:   3'- -GGUUCCGGUagCCGGUUC-------------UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 92576 0.76 0.430554
Target:  5'- gCCGAcGCCG-CGGCCGGGAGgGGCGg -3'
miRNA:   3'- -GGUUcCGGUaGCCGGUUCUCgUCGCa -5'
9371 5' -56.9 NC_002512.2 + 95835 0.75 0.475181
Target:  5'- gCGAcGGCCcgCaggaGGCCGGGGGCGGCGUc -3'
miRNA:   3'- gGUU-CCGGuaG----CCGGUUCUCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 82076 0.75 0.484383
Target:  5'- cCCGAGGCUcUCGaGCCAcGGGCGcGCGUa -3'
miRNA:   3'- -GGUUCCGGuAGC-CGGUuCUCGU-CGCA- -5'
9371 5' -56.9 NC_002512.2 + 107206 0.74 0.521998
Target:  5'- aCCAgccGGGCCG-CGGCCGgGGAGCcGCGg -3'
miRNA:   3'- -GGU---UCCGGUaGCCGGU-UCUCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 160971 0.74 0.550934
Target:  5'- cCCGAGGCCGcggCGGCCA---GCAGCa- -3'
miRNA:   3'- -GGUUCCGGUa--GCCGGUucuCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 91868 0.73 0.580341
Target:  5'- cCCGAGGCCGccgucCGGCgCGGGcGGCGGCGc -3'
miRNA:   3'- -GGUUCCGGUa----GCCG-GUUC-UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 131146 0.73 0.600131
Target:  5'- gCGGGGCagggCGGCCGAGAGgaAGCGg -3'
miRNA:   3'- gGUUCCGgua-GCCGGUUCUCg-UCGCa -5'
9371 5' -56.9 NC_002512.2 + 221297 0.73 0.610062
Target:  5'- -gGAGGCCgggGUCGGCgGGGAGCGG-GUa -3'
miRNA:   3'- ggUUCCGG---UAGCCGgUUCUCGUCgCA- -5'
9371 5' -56.9 NC_002512.2 + 110708 0.72 0.62001
Target:  5'- gCCAGGGCCAgcugcauggcgUUGGCCAGG-GCcGUGUu -3'
miRNA:   3'- -GGUUCCGGU-----------AGCCGGUUCuCGuCGCA- -5'
9371 5' -56.9 NC_002512.2 + 177567 0.72 0.639924
Target:  5'- uUCGGGGCCGUC-GCCAGGAugcgcGCcAGCGUc -3'
miRNA:   3'- -GGUUCCGGUAGcCGGUUCU-----CG-UCGCA- -5'
9371 5' -56.9 NC_002512.2 + 114006 0.72 0.639924
Target:  5'- cCCGccGCCGUCGGCCcc--GCAGCGg -3'
miRNA:   3'- -GGUucCGGUAGCCGGuucuCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 203117 0.72 0.640919
Target:  5'- gCCAGGG-CGUCGGCCGAGucgugggccaucaccGUGGCGUa -3'
miRNA:   3'- -GGUUCCgGUAGCCGGUUCu--------------CGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 157150 0.72 0.649876
Target:  5'- cCCGGGGCgGgCGGCgGGccGGGCGGCGUg -3'
miRNA:   3'- -GGUUCCGgUaGCCGgUU--CUCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 196904 0.71 0.67962
Target:  5'- gUCAuGGCCAgccucauggaGGCCGAGAGCAcgGCGg -3'
miRNA:   3'- -GGUuCCGGUag--------CCGGUUCUCGU--CGCa -5'
9371 5' -56.9 NC_002512.2 + 106718 0.71 0.689472
Target:  5'- gCCucGGCC-UCGGCCuc-GGCGGCGa -3'
miRNA:   3'- -GGuuCCGGuAGCCGGuucUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 228206 0.71 0.699278
Target:  5'- uUCGAGGCCG-CGGUCGAG-GCcgGGCGa -3'
miRNA:   3'- -GGUUCCGGUaGCCGGUUCuCG--UCGCa -5'
9371 5' -56.9 NC_002512.2 + 181138 0.71 0.700256
Target:  5'- uCCAGGGCCAggacgaacgacuccgCGGCCAGGuccuccAGCAG-GUa -3'
miRNA:   3'- -GGUUCCGGUa--------------GCCGGUUC------UCGUCgCA- -5'
9371 5' -56.9 NC_002512.2 + 220974 0.71 0.709031
Target:  5'- gCCGAGGCCGcccUGGCCAGGAGgGuCGa -3'
miRNA:   3'- -GGUUCCGGUa--GCCGGUUCUCgUcGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.