miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 221239 0.71 0.709031
Target:  5'- -uGAGGUCgAUCGGCCGGccGCGGCGg -3'
miRNA:   3'- ggUUCCGG-UAGCCGGUUcuCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 228206 0.71 0.699278
Target:  5'- uUCGAGGCCG-CGGUCGAG-GCcgGGCGa -3'
miRNA:   3'- -GGUUCCGGUaGCCGGUUCuCG--UCGCa -5'
9371 5' -56.9 NC_002512.2 + 90088 0.71 0.728344
Target:  5'- aCCGAGGCCcccgcCGGCCuGGAgGguGCGc -3'
miRNA:   3'- -GGUUCCGGua---GCCGGuUCU-CguCGCa -5'
9371 5' -56.9 NC_002512.2 + 181138 0.71 0.700256
Target:  5'- uCCAGGGCCAggacgaacgacuccgCGGCCAGGuccuccAGCAG-GUa -3'
miRNA:   3'- -GGUUCCGGUa--------------GCCGGUUC------UCGUCgCA- -5'
9371 5' -56.9 NC_002512.2 + 121150 0.7 0.747342
Target:  5'- gCCGAGacGCCGgccgCGGCCcAGGGCgaGGCGUu -3'
miRNA:   3'- -GGUUC--CGGUa---GCCGGuUCUCG--UCGCA- -5'
9371 5' -56.9 NC_002512.2 + 123155 0.7 0.737887
Target:  5'- gCCGGGGCCGaggaggCGGaCAGGAGC-GCGg -3'
miRNA:   3'- -GGUUCCGGUa-----GCCgGUUCUCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 103305 0.7 0.756702
Target:  5'- ---cGGCCGUcguaggacaggaCGGCCGAGgcccgGGCGGCGUa -3'
miRNA:   3'- gguuCCGGUA------------GCCGGUUC-----UCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 153064 0.7 0.756702
Target:  5'- cCCGgucGGGUCggCGGUCGAG-GCGGCGa -3'
miRNA:   3'- -GGU---UCCGGuaGCCGGUUCuCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 195749 0.7 0.772369
Target:  5'- uCCGAGGUCGUCGGCCGgauccuggggaccaAcguGAGCcuggacgugGGCGUg -3'
miRNA:   3'- -GGUUCCGGUAGCCGGU--------------U---CUCG---------UCGCA- -5'
9371 5' -56.9 NC_002512.2 + 90511 0.7 0.7751
Target:  5'- gCCGAGGCCGgcggCGGacgaCGGGAacGCGGUGg -3'
miRNA:   3'- -GGUUCCGGUa---GCCg---GUUCU--CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 154693 0.7 0.7751
Target:  5'- uCCGAgcGGCCGUcCGGCgucGAGCGGCGc -3'
miRNA:   3'- -GGUU--CCGGUA-GCCGguuCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 205048 0.7 0.778724
Target:  5'- gCCGAccGGCCGcgGGCCcggaccuacuggcugGAGAGCGGCGg -3'
miRNA:   3'- -GGUU--CCGGUagCCGG---------------UUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 130192 0.69 0.827133
Target:  5'- aCgAGGGCCcgucgcaugAUCGGCCAguGGuccucGGCGGCGg -3'
miRNA:   3'- -GgUUCCGG---------UAGCCGGU--UC-----UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 196146 0.69 0.827133
Target:  5'- uCCAGGGCCGcuccucgcucCGGUCGAcGAGgGGCGa -3'
miRNA:   3'- -GGUUCCGGUa---------GCCGGUU-CUCgUCGCa -5'
9371 5' -56.9 NC_002512.2 + 205377 0.69 0.827133
Target:  5'- -gAAGGCgGUCaGGcCCAGGAagGCGGCGg -3'
miRNA:   3'- ggUUCCGgUAG-CC-GGUUCU--CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 113920 0.69 0.827133
Target:  5'- aCGAGGCgGacguuccacUCGGCCAgcgAGAGCAggccGCGg -3'
miRNA:   3'- gGUUCCGgU---------AGCCGGU---UCUCGU----CGCa -5'
9371 5' -56.9 NC_002512.2 + 201862 0.69 0.784122
Target:  5'- cCUggGGCCugCGGuCCGAGgacGGCGGCGg -3'
miRNA:   3'- -GGuuCCGGuaGCC-GGUUC---UCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 208560 0.69 0.784122
Target:  5'- gCAGGGCggugCGUCaGGCCGAGucgacgcGCAGCGg -3'
miRNA:   3'- gGUUCCG----GUAG-CCGGUUCu------CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 217782 0.69 0.827133
Target:  5'- gCCGGGGUCG-CGGCCGgcuggcGGAuCGGCGUc -3'
miRNA:   3'- -GGUUCCGGUaGCCGGU------UCUcGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 207007 0.69 0.818837
Target:  5'- gCGGGGUCAgcauggUGGCCcAGuuguGCAGCGUg -3'
miRNA:   3'- gGUUCCGGUa-----GCCGGuUCu---CGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.