miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 3' -53.2 NC_002512.2 + 159389 0.7 0.946159
Target:  5'- -gGUcCCGCGGcGUCGGggcggaagGUCCGGUc -3'
miRNA:   3'- ggCA-GGCGCC-UAGCCauua----UAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 166485 0.7 0.946159
Target:  5'- gCGggaCCGCGGGUCGGaggAAgaagaagcgGUCCGGa -3'
miRNA:   3'- gGCa--GGCGCCUAGCCa--UUa--------UAGGCCg -5'
9372 3' -53.2 NC_002512.2 + 156514 0.7 0.950293
Target:  5'- cCUGggCgGCGGGgcgCGGgg--GUCCGGCg -3'
miRNA:   3'- -GGCa-GgCGCCUa--GCCauuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 173324 0.7 0.954209
Target:  5'- gCCGcCUGCGGGgucuUCGGUc----CCGGCa -3'
miRNA:   3'- -GGCaGGCGCCU----AGCCAuuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 218486 0.7 0.954209
Target:  5'- cUCGUCCcGCGGGUCGuccgcGUCCGaGCc -3'
miRNA:   3'- -GGCAGG-CGCCUAGCcauuaUAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 178433 0.69 0.957912
Target:  5'- -aGUUgGCGGAUCGGg-----UCGGCg -3'
miRNA:   3'- ggCAGgCGCCUAGCCauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 190208 0.69 0.957912
Target:  5'- -gGUCgGCGGcgCGGUc--GUCCGGg -3'
miRNA:   3'- ggCAGgCGCCuaGCCAuuaUAGGCCg -5'
9372 3' -53.2 NC_002512.2 + 107215 0.69 0.957912
Target:  5'- gCCGcggCCGgGGAgccgCGGUcaccgucGUCCGGCu -3'
miRNA:   3'- -GGCa--GGCgCCUa---GCCAuua----UAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 171834 0.69 0.961404
Target:  5'- uCCGguaCCGCGGGaCGG-----UCCGGCc -3'
miRNA:   3'- -GGCa--GGCGCCUaGCCauuauAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 152456 0.69 0.961404
Target:  5'- gUCGUCCGUGa---GGgcGUGUCgGGCg -3'
miRNA:   3'- -GGCAGGCGCcuagCCauUAUAGgCCG- -5'
9372 3' -53.2 NC_002512.2 + 157067 0.69 0.961404
Target:  5'- gCGUCC-CGGGgucCGG-GGUcgCCGGCg -3'
miRNA:   3'- gGCAGGcGCCUa--GCCaUUAuaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 179303 0.69 0.96469
Target:  5'- uCCaGUCCGCGGG-CGGcGAgg-CgGGCa -3'
miRNA:   3'- -GG-CAGGCGCCUaGCCaUUauaGgCCG- -5'
9372 3' -53.2 NC_002512.2 + 188674 0.69 0.96469
Target:  5'- uCCGaCCGCGGcggucUCGGggacgAUCaCGGCg -3'
miRNA:   3'- -GGCaGGCGCCu----AGCCauua-UAG-GCCG- -5'
9372 3' -53.2 NC_002512.2 + 111790 0.69 0.967775
Target:  5'- gCCgGUCCGCGcGGUCGccg----CCGGCg -3'
miRNA:   3'- -GG-CAGGCGC-CUAGCcauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 199490 0.69 0.967775
Target:  5'- cCCGUCCGUcagggccgcgaGGAUCaGGUcgaGGUcGUCgGGCg -3'
miRNA:   3'- -GGCAGGCG-----------CCUAG-CCA---UUA-UAGgCCG- -5'
9372 3' -53.2 NC_002512.2 + 222406 0.69 0.967775
Target:  5'- gCG-CCGCGGcuUCGGcGGgggCCGGCa -3'
miRNA:   3'- gGCaGGCGCCu-AGCCaUUauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 98817 0.69 0.967775
Target:  5'- gCCGgagCGaCGGAUCGGcc---UCCGGCg -3'
miRNA:   3'- -GGCag-GC-GCCUAGCCauuauAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 127902 0.69 0.969817
Target:  5'- cUCGaCCGuCGGAUCGGccacgagcccgCCGGCg -3'
miRNA:   3'- -GGCaGGC-GCCUAGCCauuaua-----GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 191340 0.69 0.970663
Target:  5'- gCCGUCCGCGa--CGGggGUAggucgCCGcGCg -3'
miRNA:   3'- -GGCAGGCGCcuaGCCauUAUa----GGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 111702 0.69 0.970663
Target:  5'- cUCGgggUCGCGGAUgacgaCGG-AGUcUCCGGCg -3'
miRNA:   3'- -GGCa--GGCGCCUA-----GCCaUUAuAGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.