miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 5' -59 NC_002512.2 + 219942 0.66 0.903024
Target:  5'- -cGCGCGGgggAGGGUGGAUCcCCCGg -3'
miRNA:   3'- ccCGUGCCag-UCCUGCCUAGaGGGCa -5'
9372 5' -59 NC_002512.2 + 180146 0.66 0.903024
Target:  5'- cGGGC--GGUcCAGGACGGccUCcgUCCCGa -3'
miRNA:   3'- -CCCGugCCA-GUCCUGCCu-AG--AGGGCa -5'
9372 5' -59 NC_002512.2 + 95267 0.66 0.903024
Target:  5'- aGGGCACGGaguagacCAGGACgcaGGGgaaCCCGg -3'
miRNA:   3'- -CCCGUGCCa------GUCCUG---CCUagaGGGCa -5'
9372 5' -59 NC_002512.2 + 191042 0.66 0.89698
Target:  5'- gGGGCGCGGcgCAcguGGACcGGUCgcgCCUGg -3'
miRNA:   3'- -CCCGUGCCa-GU---CCUGcCUAGa--GGGCa -5'
9372 5' -59 NC_002512.2 + 153294 0.66 0.896364
Target:  5'- -cGCugGGUCGGucCGGGUCggccgguUCCCGc -3'
miRNA:   3'- ccCGugCCAGUCcuGCCUAG-------AGGGCa -5'
9372 5' -59 NC_002512.2 + 191528 0.66 0.896364
Target:  5'- aGGCcguGgGGUCGGGcgacccgGCGGAUC-CCCGc -3'
miRNA:   3'- cCCG---UgCCAGUCC-------UGCCUAGaGGGCa -5'
9372 5' -59 NC_002512.2 + 160750 0.66 0.890731
Target:  5'- cGGCGcCGGcccCGGGcACGGAggUCCCGg -3'
miRNA:   3'- cCCGU-GCCa--GUCC-UGCCUagAGGGCa -5'
9372 5' -59 NC_002512.2 + 113268 0.66 0.890731
Target:  5'- gGGGgGCGGccggCGGGgcagccgcgGCGGGcCUCCCGc -3'
miRNA:   3'- -CCCgUGCCa---GUCC---------UGCCUaGAGGGCa -5'
9372 5' -59 NC_002512.2 + 176431 0.66 0.874916
Target:  5'- aGGGUggccaucugcgccGCGGUCGGGGuguCGGGuuccgcggcucucuUCUCCUGg -3'
miRNA:   3'- -CCCG-------------UGCCAGUCCU---GCCU--------------AGAGGGCa -5'
9372 5' -59 NC_002512.2 + 130349 0.67 0.86375
Target:  5'- uGGGCACGaccCcGGGCGGAccgCUCaCCGUc -3'
miRNA:   3'- -CCCGUGCca-GuCCUGCCUa--GAG-GGCA- -5'
9372 5' -59 NC_002512.2 + 173347 0.67 0.86375
Target:  5'- cGGCACGcGcCuGGACGuccugCUCCCGUg -3'
miRNA:   3'- cCCGUGC-CaGuCCUGCcua--GAGGGCA- -5'
9372 5' -59 NC_002512.2 + 159387 0.67 0.86375
Target:  5'- cGGGUcccGCGGcgUCGGGGCGGAaggUCCGg -3'
miRNA:   3'- -CCCG---UGCC--AGUCCUGCCUagaGGGCa -5'
9372 5' -59 NC_002512.2 + 150682 0.67 0.855796
Target:  5'- cGGGCGCGG-CGGucgccccGACGGAccguuggCUCUCGg -3'
miRNA:   3'- -CCCGUGCCaGUC-------CUGCCUa------GAGGGCa -5'
9372 5' -59 NC_002512.2 + 145514 0.67 0.849127
Target:  5'- gGGGCugcuccggcucuGCGcGUCGGGcCGGAgcaUCCCGc -3'
miRNA:   3'- -CCCG------------UGC-CAGUCCuGCCUag-AGGGCa -5'
9372 5' -59 NC_002512.2 + 153185 0.67 0.841549
Target:  5'- cGGGCAgCGGUgGGGAgGGcggCaCCCGg -3'
miRNA:   3'- -CCCGU-GCCAgUCCUgCCua-GaGGGCa -5'
9372 5' -59 NC_002512.2 + 127663 0.67 0.840782
Target:  5'- cGGC-CGGUCgAGGGCcgcuccggccgcgGcGAUCUCCCGc -3'
miRNA:   3'- cCCGuGCCAG-UCCUG-------------C-CUAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 209563 0.67 0.833803
Target:  5'- cGGaGCGCGGUCucGACGG--CUCCuCGUc -3'
miRNA:   3'- -CC-CGUGCCAGucCUGCCuaGAGG-GCA- -5'
9372 5' -59 NC_002512.2 + 204900 0.67 0.823489
Target:  5'- cGGCgaGCGGUCcuggucgggugacgGGGACGGGUucgaCUCCCu- -3'
miRNA:   3'- cCCG--UGCCAG--------------UCCUGCCUA----GAGGGca -5'
9372 5' -59 NC_002512.2 + 207758 0.68 0.821071
Target:  5'- gGGGUGgagccgccgccguggUGGUugCGGGACGGcgucGUCUCCCGg -3'
miRNA:   3'- -CCCGU---------------GCCA--GUCCUGCC----UAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 123158 0.68 0.817011
Target:  5'- gGGGCcgaggagGCGGaCAGGAgCGcGGUCaUCCCGg -3'
miRNA:   3'- -CCCG-------UGCCaGUCCU-GC-CUAG-AGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.