miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 204815 0.65 0.995484
Target:  5'- cGuCCCGGgggCGCGgcggcuccguccggGAGGACGAcggcggucgguccUCGUGGa -3'
miRNA:   3'- aC-GGGCCa--GUGU--------------UUCUUGCU-------------AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 102884 0.66 0.99514
Target:  5'- cGCCCGGaccgacuccaccgugCGCcuGGcGCGGUCGaCGGc -3'
miRNA:   3'- aCGGGCCa--------------GUGuuUCuUGCUAGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 171824 0.66 0.995069
Target:  5'- cUGCCCGG-CAUccgguaccGcGGGACGGUC-CGGc -3'
miRNA:   3'- -ACGGGCCaGUG--------UuUCUUGCUAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 224144 0.66 0.995069
Target:  5'- cGCCgGGagGCGGacgcgugaggcGGGGCGGgggcgCGCGGa -3'
miRNA:   3'- aCGGgCCagUGUU-----------UCUUGCUa----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 155021 0.66 0.995069
Target:  5'- cGuCCCGGgUGCGGuuccGGAGCGgAUCGCGa -3'
miRNA:   3'- aC-GGGCCaGUGUU----UCUUGC-UAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 171655 0.66 0.995069
Target:  5'- gGCCCuGUUGC-GGGAcaucuACGcgCGCGGg -3'
miRNA:   3'- aCGGGcCAGUGuUUCU-----UGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 195074 0.66 0.995069
Target:  5'- cGUCCGGUCGgGGAcucGAGgGGUCGaGGc -3'
miRNA:   3'- aCGGGCCAGUgUUU---CUUgCUAGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 198123 0.66 0.995069
Target:  5'- gGCCCccuugaGGUUgGCGAAGcGCGAgccccgCGCGGg -3'
miRNA:   3'- aCGGG------CCAG-UGUUUCuUGCUa-----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 140981 0.66 0.995069
Target:  5'- aUGUCCGcUCcCGAacGGAccGCGAUCGCGa -3'
miRNA:   3'- -ACGGGCcAGuGUU--UCU--UGCUAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 99110 0.66 0.995069
Target:  5'- aGCCCGGgcCGCuccAAGA--GAUCGCGc -3'
miRNA:   3'- aCGGGCCa-GUGu--UUCUugCUAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 165220 0.66 0.99485
Target:  5'- gGCCCGG---CGAGGAccuccGCGAcgugauccacgaccUCGCGGa -3'
miRNA:   3'- aCGGGCCaguGUUUCU-----UGCU--------------AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 223262 0.66 0.994309
Target:  5'- cGUCCGcGUCGuCGGGGGGCGGgacgccgCGCGc -3'
miRNA:   3'- aCGGGC-CAGU-GUUUCUUGCUa------GCGCc -5'
9373 3' -52.9 NC_002512.2 + 222581 0.66 0.994309
Target:  5'- gGCCCGccGUCGCGGAGGAgGccuGUC-CGGc -3'
miRNA:   3'- aCGGGC--CAGUGUUUCUUgC---UAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 223503 0.66 0.994309
Target:  5'- cUGCCC-GUCGCGacgaccacggcgGAGAACGGcacgcgccCGCGGc -3'
miRNA:   3'- -ACGGGcCAGUGU------------UUCUUGCUa-------GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 214181 0.66 0.994309
Target:  5'- aGCCCGucaucGUCGCGGAGGAgGAccCGCu- -3'
miRNA:   3'- aCGGGC-----CAGUGUUUCUUgCUa-GCGcc -5'
9373 3' -52.9 NC_002512.2 + 49626 0.66 0.994309
Target:  5'- aGCauucaCaGUCACAGGGAG-GAUCGuCGGg -3'
miRNA:   3'- aCGg----GcCAGUGUUUCUUgCUAGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 192073 0.66 0.993458
Target:  5'- gGCUCGGaCGCGucccugacccAGAGCGAggGCGGc -3'
miRNA:   3'- aCGGGCCaGUGUu---------UCUUGCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 227654 0.66 0.993458
Target:  5'- cGCCCgGGUC-CGGAGGAaGAgcgGCGGc -3'
miRNA:   3'- aCGGG-CCAGuGUUUCUUgCUag-CGCC- -5'
9373 3' -52.9 NC_002512.2 + 171718 0.66 0.993458
Target:  5'- -cUCCGGUaGC-GAGAACGAUCG-GGa -3'
miRNA:   3'- acGGGCCAgUGuUUCUUGCUAGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 178554 0.66 0.992508
Target:  5'- aGCCC-GUCACGAuc--CGGUUGUGGu -3'
miRNA:   3'- aCGGGcCAGUGUUucuuGCUAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.