miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9374 3' -53.9 NC_002512.2 + 182211 0.66 0.989793
Target:  5'- cCCGggUGGaACAGCACGuUCGGcggCGCCAc -3'
miRNA:   3'- -GGU--GCC-UGUCGUGUcAGCUaa-GCGGU- -5'
9374 3' -53.9 NC_002512.2 + 138653 0.66 0.989793
Target:  5'- aCGCGGcgucccugACgAGCACGGUgGAcUCGCUg -3'
miRNA:   3'- gGUGCC--------UG-UCGUGUCAgCUaAGCGGu -5'
9374 3' -53.9 NC_002512.2 + 168974 0.66 0.989404
Target:  5'- uUCGCGGuCGGUguccgcucgaccgaGCGGUCGcg-CGCCGg -3'
miRNA:   3'- -GGUGCCuGUCG--------------UGUCAGCuaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 185850 0.66 0.988453
Target:  5'- uUCugGGAgCGGUAC-GUCGAggagggCGCCu -3'
miRNA:   3'- -GGugCCU-GUCGUGuCAGCUaa----GCGGu -5'
9374 3' -53.9 NC_002512.2 + 92544 0.66 0.988453
Target:  5'- gCCGCGGcggccGCGGCgACGacGUCGGaggCGCCGa -3'
miRNA:   3'- -GGUGCC-----UGUCG-UGU--CAGCUaa-GCGGU- -5'
9374 3' -53.9 NC_002512.2 + 112951 0.66 0.988453
Target:  5'- cCCGCGGACcgGGUcgaAGUCGAa--GCCGg -3'
miRNA:   3'- -GGUGCCUG--UCGug-UCAGCUaagCGGU- -5'
9374 3' -53.9 NC_002512.2 + 159392 0.66 0.988453
Target:  5'- cCCGCGGcguCGGgGCGGaaGGUccggUCGCCAa -3'
miRNA:   3'- -GGUGCCu--GUCgUGUCagCUA----AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 219487 0.66 0.988453
Target:  5'- cCCugGGGCGGguCAGaCGAggaugcUgGCCGg -3'
miRNA:   3'- -GGugCCUGUCguGUCaGCUa-----AgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 139570 0.66 0.986981
Target:  5'- aCCugGGACAGCGCuaaccUCcGUUCGgCu -3'
miRNA:   3'- -GGugCCUGUCGUGuc---AGcUAAGCgGu -5'
9374 3' -53.9 NC_002512.2 + 149257 0.66 0.986981
Target:  5'- gCCGCGGACGGCcggACGGguacgaCGAggagCGCgAg -3'
miRNA:   3'- -GGUGCCUGUCG---UGUCa-----GCUaa--GCGgU- -5'
9374 3' -53.9 NC_002512.2 + 152351 0.66 0.986981
Target:  5'- aCCGCGGACcuccgAGCACGGagacCGGccgUgGCCGg -3'
miRNA:   3'- -GGUGCCUG-----UCGUGUCa---GCUa--AgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 169344 0.66 0.986981
Target:  5'- gCCgACGGAUAcGCGuuuGUCGAgcagaUCGCCAg -3'
miRNA:   3'- -GG-UGCCUGU-CGUgu-CAGCUa----AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 195057 0.66 0.986981
Target:  5'- cCCGCGGGCGGgAgGGUCGuccgGUCGg -3'
miRNA:   3'- -GGUGCCUGUCgUgUCAGCuaagCGGU- -5'
9374 3' -53.9 NC_002512.2 + 214954 0.66 0.985537
Target:  5'- gCCGCGGAC-GCACGGgguccggauccagacCGA--CGCCGa -3'
miRNA:   3'- -GGUGCCUGuCGUGUCa--------------GCUaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 101432 0.66 0.985369
Target:  5'- gCgGCGGccgGCGGCGCGG-CGA--CGCCGa -3'
miRNA:   3'- -GgUGCC---UGUCGUGUCaGCUaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 161518 0.66 0.985369
Target:  5'- gCGCGGACGGCACcGcCGA---GCCc -3'
miRNA:   3'- gGUGCCUGUCGUGuCaGCUaagCGGu -5'
9374 3' -53.9 NC_002512.2 + 189119 0.66 0.985369
Target:  5'- gCC-CGGACGcGCgAUAGg-GGUUCGCCGg -3'
miRNA:   3'- -GGuGCCUGU-CG-UGUCagCUAAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 214752 0.66 0.983608
Target:  5'- gCGCGGaACAGCgugccgucGCAGUCcgg-CGCCGg -3'
miRNA:   3'- gGUGCC-UGUCG--------UGUCAGcuaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 184889 0.66 0.983608
Target:  5'- gCCACGGGguCAGCggGCGG-CGGcgcuacugccccUUCGCCGa -3'
miRNA:   3'- -GGUGCCU--GUCG--UGUCaGCU------------AAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 123169 0.66 0.98305
Target:  5'- -gGCGGACaggAGCGCGGUC-AUcccggagagccccaUCGCCGa -3'
miRNA:   3'- ggUGCCUG---UCGUGUCAGcUA--------------AGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.