miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9378 3' -55.1 NC_002512.2 + 223021 0.66 0.976871
Target:  5'- aGGGAc---GGGUCG-UCGCCCaCUCCg -3'
miRNA:   3'- -UCUUaguuCCCGGCuAGCGGGaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 165726 0.66 0.976871
Target:  5'- gGGggUCGGGGGCgcAUCGCuucaCCUUcgCCg -3'
miRNA:   3'- -UCuuAGUUCCCGgcUAGCG----GGAGa-GG- -5'
9378 3' -55.1 NC_002512.2 + 95154 0.66 0.976871
Target:  5'- cGggUCGAGGaCCGGa-GCCUUCcCCa -3'
miRNA:   3'- uCuuAGUUCCcGGCUagCGGGAGaGG- -5'
9378 3' -55.1 NC_002512.2 + 102563 0.66 0.976633
Target:  5'- cGGcGUCGAuGGCCGAcuccagggucUCGCgcacgcguuuccuCCUCUCCu -3'
miRNA:   3'- -UCuUAGUUcCCGGCU----------AGCG-------------GGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 135137 0.66 0.971773
Target:  5'- ----cCGAGGGCCGGgcCGCCCUg--- -3'
miRNA:   3'- ucuuaGUUCCCGGCUa-GCGGGAgagg -5'
9378 3' -55.1 NC_002512.2 + 154922 0.66 0.968941
Target:  5'- gGGAAaCGuGGGCgGAcCGCUCUCgUCCc -3'
miRNA:   3'- -UCUUaGUuCCCGgCUaGCGGGAG-AGG- -5'
9378 3' -55.1 NC_002512.2 + 172486 0.66 0.968941
Target:  5'- ---uUCAGGGGCucaaCGAccugcaucaguUCGUCUUCUCCc -3'
miRNA:   3'- ucuuAGUUCCCG----GCU-----------AGCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 212933 0.66 0.968647
Target:  5'- -cGAUCGGGcGGCCcgguccgaGUCGCCCUacggcgcCUCCg -3'
miRNA:   3'- ucUUAGUUC-CCGGc-------UAGCGGGA-------GAGG- -5'
9378 3' -55.1 NC_002512.2 + 219885 0.66 0.965912
Target:  5'- cGGggUCgGAGacgaGCCGAcCGCCCUcCUCUc -3'
miRNA:   3'- -UCuuAG-UUCc---CGGCUaGCGGGA-GAGG- -5'
9378 3' -55.1 NC_002512.2 + 102350 0.66 0.965912
Target:  5'- cGggUCcGGGcGUCGGUCGUCCggaggUCCu -3'
miRNA:   3'- uCuuAGuUCC-CGGCUAGCGGGag---AGG- -5'
9378 3' -55.1 NC_002512.2 + 176017 0.66 0.962682
Target:  5'- -uGGUCccuGGGGaacggaCGGUCcCCCUCUCCu -3'
miRNA:   3'- ucUUAGu--UCCCg-----GCUAGcGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 113387 0.66 0.962682
Target:  5'- uGGAcCAGGGcGuuGcgCGCgCUCUCCc -3'
miRNA:   3'- uCUUaGUUCC-CggCuaGCGgGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 199600 0.66 0.962011
Target:  5'- cGAcgCGGGGGCCuccuccauggCGCCggCUCCg -3'
miRNA:   3'- uCUuaGUUCCCGGcua-------GCGGgaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 204666 0.67 0.959243
Target:  5'- gGGGAUCGccGGCgGcUCGCUCccgCUCCg -3'
miRNA:   3'- -UCUUAGUucCCGgCuAGCGGGa--GAGG- -5'
9378 3' -55.1 NC_002512.2 + 148673 0.67 0.959243
Target:  5'- cGAucCAGcGGGCCG-UgGCCCUCgucgCCg -3'
miRNA:   3'- uCUuaGUU-CCCGGCuAgCGGGAGa---GG- -5'
9378 3' -55.1 NC_002512.2 + 208023 0.67 0.959243
Target:  5'- uAGAGUC-GGGGCgGAgacccUgGCCCgggugguuuUCUCCa -3'
miRNA:   3'- -UCUUAGuUCCCGgCU-----AgCGGG---------AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 214636 0.67 0.951729
Target:  5'- gGGGA-CGcGGGCCGccUCGCaguCUCUCCu -3'
miRNA:   3'- -UCUUaGUuCCCGGCu-AGCGg--GAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 184407 0.67 0.947644
Target:  5'- ----cCGGGGGgCGcUCgGCCUUCUCCg -3'
miRNA:   3'- ucuuaGUUCCCgGCuAG-CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 211974 0.67 0.947644
Target:  5'- --cGUCAGGacgcGGCCG-UCGUCCUCggggCCg -3'
miRNA:   3'- ucuUAGUUC----CCGGCuAGCGGGAGa---GG- -5'
9378 3' -55.1 NC_002512.2 + 111722 0.68 0.938806
Target:  5'- cGGAGUCuccggcGGGCaCGGUCGCCaugucgcggUUCCg -3'
miRNA:   3'- -UCUUAGuu----CCCG-GCUAGCGGga-------GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.