miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9380 5' -57.9 NC_002512.2 + 146727 0.66 0.915914
Target:  5'- gGCGGCGGCCg---CGGCCGccGGGc- -3'
miRNA:   3'- gUGCUGCUGGguaaGCCGGCa-CCCuu -5'
9380 5' -57.9 NC_002512.2 + 137544 0.66 0.904331
Target:  5'- cCGCGGCGACggGUUCGGUCGc-GGAAa -3'
miRNA:   3'- -GUGCUGCUGggUAAGCCGGCacCCUU- -5'
9380 5' -57.9 NC_002512.2 + 187002 0.66 0.904331
Target:  5'- aCGCGGCgGGCCUGUacgCGGgCGUGGaGGAg -3'
miRNA:   3'- -GUGCUG-CUGGGUAa--GCCgGCACC-CUU- -5'
9380 5' -57.9 NC_002512.2 + 156288 0.66 0.903125
Target:  5'- -cCGAgUGGCCCGUcgugaagUCGGCCGUgucgcacGGGGAg -3'
miRNA:   3'- guGCU-GCUGGGUA-------AGCCGGCA-------CCCUU- -5'
9380 5' -57.9 NC_002512.2 + 113152 0.66 0.898214
Target:  5'- gGCGcCGGCCUcgccgCGGCCGggcGGGAc -3'
miRNA:   3'- gUGCuGCUGGGuaa--GCCGGCa--CCCUu -5'
9380 5' -57.9 NC_002512.2 + 92252 0.66 0.898214
Target:  5'- --gGACGACCgGcugUCGaaGCUGUGGGAGa -3'
miRNA:   3'- gugCUGCUGGgUa--AGC--CGGCACCCUU- -5'
9380 5' -57.9 NC_002512.2 + 201936 0.66 0.898214
Target:  5'- gGCGACgGGCCCG---GGUaCGUGGGAGa -3'
miRNA:   3'- gUGCUG-CUGGGUaagCCG-GCACCCUU- -5'
9380 5' -57.9 NC_002512.2 + 88146 0.66 0.898214
Target:  5'- gGgGACGAUCCGcccgUGGCCGUcgugcGGGAAc -3'
miRNA:   3'- gUgCUGCUGGGUaa--GCCGGCA-----CCCUU- -5'
9380 5' -57.9 NC_002512.2 + 148979 0.66 0.89444
Target:  5'- cCGCG-CGACCCAccaccugaaccacCGGCCG-GGGGg -3'
miRNA:   3'- -GUGCuGCUGGGUaa-----------GCCGGCaCCCUu -5'
9380 5' -57.9 NC_002512.2 + 130667 0.67 0.88534
Target:  5'- uGCGcACGACCCAcacggcggCGGCCGcGGaGAu -3'
miRNA:   3'- gUGC-UGCUGGGUaa------GCCGGCaCC-CUu -5'
9380 5' -57.9 NC_002512.2 + 201462 0.67 0.88534
Target:  5'- gAgGugGuCCCcgUCGGCCG-GGGu- -3'
miRNA:   3'- gUgCugCuGGGuaAGCCGGCaCCCuu -5'
9380 5' -57.9 NC_002512.2 + 157159 0.67 0.87859
Target:  5'- gGCGGCGGgCCGggCGGC-GUGGGc- -3'
miRNA:   3'- gUGCUGCUgGGUaaGCCGgCACCCuu -5'
9380 5' -57.9 NC_002512.2 + 108517 0.67 0.87859
Target:  5'- -cCGGCG-CCCGacCGGCCG-GGGAc -3'
miRNA:   3'- guGCUGCuGGGUaaGCCGGCaCCCUu -5'
9380 5' -57.9 NC_002512.2 + 95228 0.67 0.864485
Target:  5'- uCGCGuCGGCCCcgcacUCGGCCacggcguuGUGGGGc -3'
miRNA:   3'- -GUGCuGCUGGGua---AGCCGG--------CACCCUu -5'
9380 5' -57.9 NC_002512.2 + 45812 0.67 0.857139
Target:  5'- -uCGACGACaCCGUgauGCCGUGGGc- -3'
miRNA:   3'- guGCUGCUG-GGUAagcCGGCACCCuu -5'
9380 5' -57.9 NC_002512.2 + 73935 0.68 0.841889
Target:  5'- aCGCGACGGCCUggUCuucauGuuGUGGGGu -3'
miRNA:   3'- -GUGCUGCUGGGuaAGc----CggCACCCUu -5'
9380 5' -57.9 NC_002512.2 + 94663 0.68 0.841889
Target:  5'- --aGGCGGCCCGg--GGCCG-GGGGg -3'
miRNA:   3'- gugCUGCUGGGUaagCCGGCaCCCUu -5'
9380 5' -57.9 NC_002512.2 + 201653 0.68 0.833996
Target:  5'- gCGCGACGGCCC---CGGCCGcGGu-- -3'
miRNA:   3'- -GUGCUGCUGGGuaaGCCGGCaCCcuu -5'
9380 5' -57.9 NC_002512.2 + 222652 0.68 0.825934
Target:  5'- cCGCGACGGCCgGccgGGCCGaGGGGc -3'
miRNA:   3'- -GUGCUGCUGGgUaagCCGGCaCCCUu -5'
9380 5' -57.9 NC_002512.2 + 151042 0.68 0.825934
Target:  5'- gGCGGCGGCCCGUcacgCGGUccucgaCGgcgGGGGAu -3'
miRNA:   3'- gUGCUGCUGGGUAa---GCCG------GCa--CCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.