miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9381 3' -55.1 NC_002512.2 + 123632 0.74 0.685749
Target:  5'- aAGAcg-GGUCCCGggGAgaGCGCGCc -3'
miRNA:   3'- cUCUauaCCAGGGCuaCUggCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 188924 0.73 0.705376
Target:  5'- gGAGA----GUCCCGGUGGCgGgGCGCg -3'
miRNA:   3'- -CUCUauacCAGGGCUACUGgCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 209345 0.73 0.714135
Target:  5'- gGAGGUGUGGUacgaggucggcgaCCUGgcGACCGUGUGUc -3'
miRNA:   3'- -CUCUAUACCA-------------GGGCuaCUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 174755 0.73 0.715105
Target:  5'- aGGAUGUGGUCCag--GACCGCGUcCg -3'
miRNA:   3'- cUCUAUACCAGGgcuaCUGGCGCGcG- -5'
9381 3' -55.1 NC_002512.2 + 141278 0.72 0.753265
Target:  5'- -------cGUCCCGAcgccGGCCGCGCGCa -3'
miRNA:   3'- cucuauacCAGGGCUa---CUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 224460 0.72 0.775418
Target:  5'- ----cGUGGUCUCGGUGuuauuauaaauccagGCUGCGCGCc -3'
miRNA:   3'- cucuaUACCAGGGCUAC---------------UGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 166189 0.7 0.840417
Target:  5'- gGAGAUccccGUGG-CCuucuugggcggCGAggagGGCCGCGCGCg -3'
miRNA:   3'- -CUCUA----UACCaGG-----------GCUa---CUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 147261 0.7 0.855927
Target:  5'- aGAGAaGUGGgaaaCCCGAcccgGgacGCCGCGCGUc -3'
miRNA:   3'- -CUCUaUACCa---GGGCUa---C---UGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 154215 0.7 0.862659
Target:  5'- aGGAUA-GGUCCCuauagguaccuagGAUagGACgCGCGCGCg -3'
miRNA:   3'- cUCUAUaCCAGGG-------------CUA--CUG-GCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 114233 0.7 0.862659
Target:  5'- -uGAUGUGGUCCucaucgaCGgcGACCGgcUGCGCg -3'
miRNA:   3'- cuCUAUACCAGG-------GCuaCUGGC--GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 130813 0.7 0.877737
Target:  5'- -cGGUGgccgaGGUUCCGGUGACgGCGCu- -3'
miRNA:   3'- cuCUAUa----CCAGGGCUACUGgCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 220817 0.7 0.877737
Target:  5'- ----cGUGGUCCCGccgcUGGCCGUGCu- -3'
miRNA:   3'- cucuaUACCAGGGCu---ACUGGCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 182621 0.69 0.884597
Target:  5'- ------cGG-CUCGGUGGCCGCGCGa -3'
miRNA:   3'- cucuauaCCaGGGCUACUGGCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 103104 0.69 0.897678
Target:  5'- cAGGUcgGGUUCUGAcacaGGCUGCGCGg -3'
miRNA:   3'- cUCUAuaCCAGGGCUa---CUGGCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 211770 0.69 0.903891
Target:  5'- cGGGAggacGUGGaggCCCgGGUGGCCGCGgGg -3'
miRNA:   3'- -CUCUa---UACCa--GGG-CUACUGGCGCgCg -5'
9381 3' -55.1 NC_002512.2 + 3681 0.69 0.903891
Target:  5'- -cGGUgAUGG-CCCG---GCCGCGCGCu -3'
miRNA:   3'- cuCUA-UACCaGGGCuacUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 225762 0.69 0.906314
Target:  5'- cGGGAcAUGGgauccaucuguUCCCGAggcugcgccggccgGGCCGCGgGCg -3'
miRNA:   3'- -CUCUaUACC-----------AGGGCUa-------------CUGGCGCgCG- -5'
9381 3' -55.1 NC_002512.2 + 112482 0.68 0.915649
Target:  5'- cGGAUGacgcccUGGUCCuCGAUG-CCGUGCa- -3'
miRNA:   3'- cUCUAU------ACCAGG-GCUACuGGCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 127116 0.68 0.915649
Target:  5'- gGAGAUGggcgGGauaccUCCCGAUcccguauccguaGGgCGCGCGCu -3'
miRNA:   3'- -CUCUAUa---CC-----AGGGCUA------------CUgGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 39604 0.68 0.915649
Target:  5'- aAGAUGUGGUCCCu---ACgGgGCGCu -3'
miRNA:   3'- cUCUAUACCAGGGcuacUGgCgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.