miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9381 3' -55.1 NC_002512.2 + 3681 0.69 0.903891
Target:  5'- -cGGUgAUGG-CCCG---GCCGCGCGCu -3'
miRNA:   3'- cuCUA-UACCaGGGCuacUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 33049 0.66 0.972259
Target:  5'- cGGGGUGUGGcUCCa-GUgaacgcucucaaaaGACCGgCGCGCg -3'
miRNA:   3'- -CUCUAUACC-AGGgcUA--------------CUGGC-GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 36226 0.68 0.936452
Target:  5'- gGAGAc--GGUCCCGAggacGACgGCGaguaGCg -3'
miRNA:   3'- -CUCUauaCCAGGGCUa---CUGgCGCg---CG- -5'
9381 3' -55.1 NC_002512.2 + 39604 0.68 0.915649
Target:  5'- aAGAUGUGGUCCCu---ACgGgGCGCu -3'
miRNA:   3'- cUCUAUACCAGGGcuacUGgCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 88138 0.67 0.957404
Target:  5'- cGGAUGUaGGggacgauccgCCCG-UGGCCGuCGUGCg -3'
miRNA:   3'- cUCUAUA-CCa---------GGGCuACUGGC-GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 92592 0.67 0.957404
Target:  5'- gGAGGggcggcGGUCCCGA-GGCCGguCGCGa -3'
miRNA:   3'- -CUCUaua---CCAGGGCUaCUGGC--GCGCg -5'
9381 3' -55.1 NC_002512.2 + 95363 0.67 0.957404
Target:  5'- gGGGAUA-GGUCCCGucguaACCG-GCGUa -3'
miRNA:   3'- -CUCUAUaCCAGGGCuac--UGGCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 95854 0.67 0.945497
Target:  5'- cGGGGgcgGcGUCCUcccagGGCCGCGCGCc -3'
miRNA:   3'- -CUCUauaC-CAGGGcua--CUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 96501 0.66 0.973059
Target:  5'- ----cAUGGUCCgGgcGACCGCcggagggagccGCGCc -3'
miRNA:   3'- cucuaUACCAGGgCuaCUGGCG-----------CGCG- -5'
9381 3' -55.1 NC_002512.2 + 103104 0.69 0.897678
Target:  5'- cAGGUcgGGUUCUGAcacaGGCUGCGCGg -3'
miRNA:   3'- cUCUAuaCCAGGGCUa---CUGGCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 105054 0.66 0.975606
Target:  5'- ------aGGUCCCGGUGuCCgGCaCGCa -3'
miRNA:   3'- cucuauaCCAGGGCUACuGG-CGcGCG- -5'
9381 3' -55.1 NC_002512.2 + 110678 0.66 0.975606
Target:  5'- ------cGGUCCUGGUGcUCGCGCaGCc -3'
miRNA:   3'- cucuauaCCAGGGCUACuGGCGCG-CG- -5'
9381 3' -55.1 NC_002512.2 + 112482 0.68 0.915649
Target:  5'- cGGAUGacgcccUGGUCCuCGAUG-CCGUGCa- -3'
miRNA:   3'- cUCUAU------ACCAGG-GCUACuGGCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 114233 0.7 0.862659
Target:  5'- -uGAUGUGGUCCucaucgaCGgcGACCGgcUGCGCg -3'
miRNA:   3'- cuCUAUACCAGG-------GCuaCUGGC--GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 116470 0.67 0.957404
Target:  5'- gGGGcgGUGaUCCCGgcGGCCcaCGCGCa -3'
miRNA:   3'- -CUCuaUACcAGGGCuaCUGGc-GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 118967 0.68 0.915649
Target:  5'- cGAGAgcgcGGcCCUGGUGACgGUGgGCa -3'
miRNA:   3'- -CUCUaua-CCaGGGCUACUGgCGCgCG- -5'
9381 3' -55.1 NC_002512.2 + 123632 0.74 0.685749
Target:  5'- aAGAcg-GGUCCCGggGAgaGCGCGCc -3'
miRNA:   3'- cUCUauaCCAGGGCuaCUggCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 127116 0.68 0.915649
Target:  5'- gGAGAUGggcgGGauaccUCCCGAUcccguauccguaGGgCGCGCGCu -3'
miRNA:   3'- -CUCUAUa---CC-----AGGGCUA------------CUgGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 130742 0.66 0.973059
Target:  5'- aGAGAUccGaGUCCCcuugcuaaaGAUcGCCGCgGCGCg -3'
miRNA:   3'- -CUCUAuaC-CAGGG---------CUAcUGGCG-CGCG- -5'
9381 3' -55.1 NC_002512.2 + 130813 0.7 0.877737
Target:  5'- -cGGUGgccgaGGUUCCGGUGACgGCGCu- -3'
miRNA:   3'- cuCUAUa----CCAGGGCUACUGgCGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.