miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9381 3' -55.1 NC_002512.2 + 227549 0.67 0.944633
Target:  5'- gGAGGgcgGGUCCgCGAccgaggccuccgGACCGCcgGCGCa -3'
miRNA:   3'- -CUCUauaCCAGG-GCUa-----------CUGGCG--CGCG- -5'
9381 3' -55.1 NC_002512.2 + 226799 0.66 0.977972
Target:  5'- ----cGUGGUCUCGGccgccgccgUGGCCGC-CGCc -3'
miRNA:   3'- cucuaUACCAGGGCU---------ACUGGCGcGCG- -5'
9381 3' -55.1 NC_002512.2 + 225762 0.69 0.906314
Target:  5'- cGGGAcAUGGgauccaucuguUCCCGAggcugcgccggccgGGCCGCGgGCg -3'
miRNA:   3'- -CUCUaUACC-----------AGGGCUa-------------CUGGCGCgCG- -5'
9381 3' -55.1 NC_002512.2 + 224460 0.72 0.775418
Target:  5'- ----cGUGGUCUCGGUGuuauuauaaauccagGCUGCGCGCc -3'
miRNA:   3'- cucuaUACCAGGGCUAC---------------UGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 220817 0.7 0.877737
Target:  5'- ----cGUGGUCCCGccgcUGGCCGUGCu- -3'
miRNA:   3'- cucuaUACCAGGGCu---ACUGGCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 219948 0.68 0.931592
Target:  5'- gGGGAggGUGGaUCCCccgGGUCGCGCGCu -3'
miRNA:   3'- -CUCUa-UACC-AGGGcuaCUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 211770 0.69 0.903891
Target:  5'- cGGGAggacGUGGaggCCCgGGUGGCCGCGgGg -3'
miRNA:   3'- -CUCUa---UACCa--GGG-CUACUGGCGCgCg -5'
9381 3' -55.1 NC_002512.2 + 209345 0.73 0.714135
Target:  5'- gGAGGUGUGGUacgaggucggcgaCCUGgcGACCGUGUGUc -3'
miRNA:   3'- -CUCUAUACCA-------------GGGCuaCUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 207080 0.66 0.973059
Target:  5'- cGAGAaGUGGaUCCCGcccuuGUGGuaGCGgGCg -3'
miRNA:   3'- -CUCUaUACC-AGGGC-----UACUggCGCgCG- -5'
9381 3' -55.1 NC_002512.2 + 204534 0.67 0.953653
Target:  5'- uGAGAc---GUUUCGAggagGACCGCGUGCu -3'
miRNA:   3'- -CUCUauacCAGGGCUa---CUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 188924 0.73 0.705376
Target:  5'- gGAGA----GUCCCGGUGGCgGgGCGCg -3'
miRNA:   3'- -CUCUauacCAGGGCUACUGgCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 182679 0.66 0.977972
Target:  5'- -uGAUGcGGUUCUGG-GGCCGgGCGUc -3'
miRNA:   3'- cuCUAUaCCAGGGCUaCUGGCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 182621 0.69 0.884597
Target:  5'- ------cGG-CUCGGUGGCCGCGCGa -3'
miRNA:   3'- cucuauaCCaGGGCUACUGGCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 178228 0.68 0.936452
Target:  5'- cAGGUccagGGUCuCCGggGACgGCGCGg -3'
miRNA:   3'- cUCUAua--CCAG-GGCuaCUGgCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 174755 0.73 0.715105
Target:  5'- aGGAUGUGGUCCag--GACCGCGUcCg -3'
miRNA:   3'- cUCUAUACCAGGgcuaCUGGCGCGcG- -5'
9381 3' -55.1 NC_002512.2 + 171786 0.68 0.926504
Target:  5'- gGAGGUGgcucaccucGUCCCGAcGG-CGCGCGCu -3'
miRNA:   3'- -CUCUAUac-------CAGGGCUaCUgGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 169973 0.66 0.977744
Target:  5'- aGGGUcgGGgcgaacgUCCCGcucGCCGUGCGCc -3'
miRNA:   3'- cUCUAuaCC-------AGGGCuacUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 166189 0.7 0.840417
Target:  5'- gGAGAUccccGUGG-CCuucuugggcggCGAggagGGCCGCGCGCg -3'
miRNA:   3'- -CUCUA----UACCaGG-----------GCUa---CUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 165470 0.66 0.973059
Target:  5'- -cGAUcgGaagaUCCCGAguuucgggUGGCUGCGCGUg -3'
miRNA:   3'- cuCUAuaCc---AGGGCU--------ACUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 160771 0.68 0.936452
Target:  5'- ------aGGUCCCGGagcggGGCCG-GCGCa -3'
miRNA:   3'- cucuauaCCAGGGCUa----CUGGCgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.