Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 141278 | 0.72 | 0.753265 |
Target: 5'- -------cGUCCCGAcgccGGCCGCGCGCa -3' miRNA: 3'- cucuauacCAGGGCUa---CUGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 144539 | 0.66 | 0.967398 |
Target: 5'- ------cGGUCCUcGUGugCGaCGCGCg -3' miRNA: 3'- cucuauaCCAGGGcUACugGC-GCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 147261 | 0.7 | 0.855927 |
Target: 5'- aGAGAaGUGGgaaaCCCGAcccgGgacGCCGCGCGUc -3' miRNA: 3'- -CUCUaUACCa---GGGCUa---C---UGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 149160 | 0.68 | 0.92119 |
Target: 5'- cGGGGccgGUGccgCCCGcgGGcCCGCGCGCc -3' miRNA: 3'- -CUCUa--UACca-GGGCuaCU-GGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 150731 | 0.66 | 0.975606 |
Target: 5'- -----uUGGacuUCCCGucgGcCCGCGCGCg -3' miRNA: 3'- cucuauACC---AGGGCua-CuGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 151074 | 0.67 | 0.957404 |
Target: 5'- gGGGAUGcGGUCUCGGU--CCGCGC-Cg -3' miRNA: 3'- -CUCUAUaCCAGGGCUAcuGGCGCGcG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 154215 | 0.7 | 0.862659 |
Target: 5'- aGGAUA-GGUCCCuauagguaccuagGAUagGACgCGCGCGCg -3' miRNA: 3'- cUCUAUaCCAGGG-------------CUA--CUG-GCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 155054 | 0.66 | 0.964272 |
Target: 5'- gGGGAg--GGUCuCCGu---UCGCGCGCg -3' miRNA: 3'- -CUCUauaCCAG-GGCuacuGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 160771 | 0.68 | 0.936452 |
Target: 5'- ------aGGUCCCGGagcggGGCCG-GCGCa -3' miRNA: 3'- cucuauaCCAGGGCUa----CUGGCgCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 165470 | 0.66 | 0.973059 |
Target: 5'- -cGAUcgGaagaUCCCGAguuucgggUGGCUGCGCGUg -3' miRNA: 3'- cuCUAuaCc---AGGGCU--------ACUGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 166189 | 0.7 | 0.840417 |
Target: 5'- gGAGAUccccGUGG-CCuucuugggcggCGAggagGGCCGCGCGCg -3' miRNA: 3'- -CUCUA----UACCaGG-----------GCUa---CUGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 169973 | 0.66 | 0.977744 |
Target: 5'- aGGGUcgGGgcgaacgUCCCGcucGCCGUGCGCc -3' miRNA: 3'- cUCUAuaCC-------AGGGCuacUGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 171786 | 0.68 | 0.926504 |
Target: 5'- gGAGGUGgcucaccucGUCCCGAcGG-CGCGCGCu -3' miRNA: 3'- -CUCUAUac-------CAGGGCUaCUgGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 174755 | 0.73 | 0.715105 |
Target: 5'- aGGAUGUGGUCCag--GACCGCGUcCg -3' miRNA: 3'- cUCUAUACCAGGgcuaCUGGCGCGcG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 178228 | 0.68 | 0.936452 |
Target: 5'- cAGGUccagGGUCuCCGggGACgGCGCGg -3' miRNA: 3'- cUCUAua--CCAG-GGCuaCUGgCGCGCg -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 182621 | 0.69 | 0.884597 |
Target: 5'- ------cGG-CUCGGUGGCCGCGCGa -3' miRNA: 3'- cucuauaCCaGGGCUACUGGCGCGCg -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 182679 | 0.66 | 0.977972 |
Target: 5'- -uGAUGcGGUUCUGG-GGCCGgGCGUc -3' miRNA: 3'- cuCUAUaCCAGGGCUaCUGGCgCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 188924 | 0.73 | 0.705376 |
Target: 5'- gGAGA----GUCCCGGUGGCgGgGCGCg -3' miRNA: 3'- -CUCUauacCAGGGCUACUGgCgCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 204534 | 0.67 | 0.953653 |
Target: 5'- uGAGAc---GUUUCGAggagGACCGCGUGCu -3' miRNA: 3'- -CUCUauacCAGGGCUa---CUGGCGCGCG- -5' |
|||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 207080 | 0.66 | 0.973059 |
Target: 5'- cGAGAaGUGGaUCCCGcccuuGUGGuaGCGgGCg -3' miRNA: 3'- -CUCUaUACC-AGGGC-----UACUggCGCgCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home