Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9381 | 3' | -55.1 | NC_002512.2 | + | 118967 | 0.68 | 0.915649 |
Target: 5'- cGAGAgcgcGGcCCUGGUGACgGUGgGCa -3' miRNA: 3'- -CUCUaua-CCaGGGCUACUGgCGCgCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 149160 | 0.68 | 0.92119 |
Target: 5'- cGGGGccgGUGccgCCCGcgGGcCCGCGCGCc -3' miRNA: 3'- -CUCUa--UACca-GGGCuaCU-GGCGCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 171786 | 0.68 | 0.926504 |
Target: 5'- gGAGGUGgcucaccucGUCCCGAcGG-CGCGCGCu -3' miRNA: 3'- -CUCUAUac-------CAGGGCUaCUgGCGCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 219948 | 0.68 | 0.931592 |
Target: 5'- gGGGAggGUGGaUCCCccgGGUCGCGCGCu -3' miRNA: 3'- -CUCUa-UACC-AGGGcuaCUGGCGCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 178228 | 0.68 | 0.936452 |
Target: 5'- cAGGUccagGGUCuCCGggGACgGCGCGg -3' miRNA: 3'- cUCUAua--CCAG-GGCuaCUGgCGCGCg -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 160771 | 0.68 | 0.936452 |
Target: 5'- ------aGGUCCCGGagcggGGCCG-GCGCa -3' miRNA: 3'- cucuauaCCAGGGCUa----CUGGCgCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 36226 | 0.68 | 0.936452 |
Target: 5'- gGAGAc--GGUCCCGAggacGACgGCGaguaGCg -3' miRNA: 3'- -CUCUauaCCAGGGCUa---CUGgCGCg---CG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 227549 | 0.67 | 0.944633 |
Target: 5'- gGAGGgcgGGUCCgCGAccgaggccuccgGACCGCcgGCGCa -3' miRNA: 3'- -CUCUauaCCAGG-GCUa-----------CUGGCG--CGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 95854 | 0.67 | 0.945497 |
Target: 5'- cGGGGgcgGcGUCCUcccagGGCCGCGCGCc -3' miRNA: 3'- -CUCUauaC-CAGGGcua--CUGGCGCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 204534 | 0.67 | 0.953653 |
Target: 5'- uGAGAc---GUUUCGAggagGACCGCGUGCu -3' miRNA: 3'- -CUCUauacCAGGGCUa---CUGGCGCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 88138 | 0.67 | 0.957404 |
Target: 5'- cGGAUGUaGGggacgauccgCCCG-UGGCCGuCGUGCg -3' miRNA: 3'- cUCUAUA-CCa---------GGGCuACUGGC-GCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 116470 | 0.67 | 0.957404 |
Target: 5'- gGGGcgGUGaUCCCGgcGGCCcaCGCGCa -3' miRNA: 3'- -CUCuaUACcAGGGCuaCUGGc-GCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 95363 | 0.67 | 0.957404 |
Target: 5'- gGGGAUA-GGUCCCGucguaACCG-GCGUa -3' miRNA: 3'- -CUCUAUaCCAGGGCuac--UGGCgCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 151074 | 0.67 | 0.957404 |
Target: 5'- gGGGAUGcGGUCUCGGU--CCGCGC-Cg -3' miRNA: 3'- -CUCUAUaCCAGGGCUAcuGGCGCGcG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 92592 | 0.67 | 0.957404 |
Target: 5'- gGAGGggcggcGGUCCCGA-GGCCGguCGCGa -3' miRNA: 3'- -CUCUaua---CCAGGGCUaCUGGC--GCGCg -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 155054 | 0.66 | 0.964272 |
Target: 5'- gGGGAg--GGUCuCCGu---UCGCGCGCg -3' miRNA: 3'- -CUCUauaCCAG-GGCuacuGGCGCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 144539 | 0.66 | 0.967398 |
Target: 5'- ------cGGUCCUcGUGugCGaCGCGCg -3' miRNA: 3'- cucuauaCCAGGGcUACugGC-GCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 33049 | 0.66 | 0.972259 |
Target: 5'- cGGGGUGUGGcUCCa-GUgaacgcucucaaaaGACCGgCGCGCg -3' miRNA: 3'- -CUCUAUACC-AGGgcUA--------------CUGGC-GCGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 96501 | 0.66 | 0.973059 |
Target: 5'- ----cAUGGUCCgGgcGACCGCcggagggagccGCGCc -3' miRNA: 3'- cucuaUACCAGGgCuaCUGGCG-----------CGCG- -5' |
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9381 | 3' | -55.1 | NC_002512.2 | + | 130742 | 0.66 | 0.973059 |
Target: 5'- aGAGAUccGaGUCCCcuugcuaaaGAUcGCCGCgGCGCg -3' miRNA: 3'- -CUCUAuaC-CAGGG---------CUAcUGGCG-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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