miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9381 3' -55.1 NC_002512.2 + 227549 0.67 0.944633
Target:  5'- gGAGGgcgGGUCCgCGAccgaggccuccgGACCGCcgGCGCa -3'
miRNA:   3'- -CUCUauaCCAGG-GCUa-----------CUGGCG--CGCG- -5'
9381 3' -55.1 NC_002512.2 + 178228 0.68 0.936452
Target:  5'- cAGGUccagGGUCuCCGggGACgGCGCGg -3'
miRNA:   3'- cUCUAua--CCAG-GGCuaCUGgCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 36226 0.68 0.936452
Target:  5'- gGAGAc--GGUCCCGAggacGACgGCGaguaGCg -3'
miRNA:   3'- -CUCUauaCCAGGGCUa---CUGgCGCg---CG- -5'
9381 3' -55.1 NC_002512.2 + 160771 0.68 0.936452
Target:  5'- ------aGGUCCCGGagcggGGCCG-GCGCa -3'
miRNA:   3'- cucuauaCCAGGGCUa----CUGGCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 219948 0.68 0.931592
Target:  5'- gGGGAggGUGGaUCCCccgGGUCGCGCGCu -3'
miRNA:   3'- -CUCUa-UACC-AGGGcuaCUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 171786 0.68 0.926504
Target:  5'- gGAGGUGgcucaccucGUCCCGAcGG-CGCGCGCu -3'
miRNA:   3'- -CUCUAUac-------CAGGGCUaCUgGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 149160 0.68 0.92119
Target:  5'- cGGGGccgGUGccgCCCGcgGGcCCGCGCGCc -3'
miRNA:   3'- -CUCUa--UACca-GGGCuaCU-GGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 118967 0.68 0.915649
Target:  5'- cGAGAgcgcGGcCCUGGUGACgGUGgGCa -3'
miRNA:   3'- -CUCUaua-CCaGGGCUACUGgCGCgCG- -5'
9381 3' -55.1 NC_002512.2 + 39604 0.68 0.915649
Target:  5'- aAGAUGUGGUCCCu---ACgGgGCGCu -3'
miRNA:   3'- cUCUAUACCAGGGcuacUGgCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 127116 0.68 0.915649
Target:  5'- gGAGAUGggcgGGauaccUCCCGAUcccguauccguaGGgCGCGCGCu -3'
miRNA:   3'- -CUCUAUa---CC-----AGGGCUA------------CUgGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 112482 0.68 0.915649
Target:  5'- cGGAUGacgcccUGGUCCuCGAUG-CCGUGCa- -3'
miRNA:   3'- cUCUAU------ACCAGG-GCUACuGGCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 225762 0.69 0.906314
Target:  5'- cGGGAcAUGGgauccaucuguUCCCGAggcugcgccggccgGGCCGCGgGCg -3'
miRNA:   3'- -CUCUaUACC-----------AGGGCUa-------------CUGGCGCgCG- -5'
9381 3' -55.1 NC_002512.2 + 211770 0.69 0.903891
Target:  5'- cGGGAggacGUGGaggCCCgGGUGGCCGCGgGg -3'
miRNA:   3'- -CUCUa---UACCa--GGG-CUACUGGCGCgCg -5'
9381 3' -55.1 NC_002512.2 + 3681 0.69 0.903891
Target:  5'- -cGGUgAUGG-CCCG---GCCGCGCGCu -3'
miRNA:   3'- cuCUA-UACCaGGGCuacUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 103104 0.69 0.897678
Target:  5'- cAGGUcgGGUUCUGAcacaGGCUGCGCGg -3'
miRNA:   3'- cUCUAuaCCAGGGCUa---CUGGCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 182621 0.69 0.884597
Target:  5'- ------cGG-CUCGGUGGCCGCGCGa -3'
miRNA:   3'- cucuauaCCaGGGCUACUGGCGCGCg -5'
9381 3' -55.1 NC_002512.2 + 130813 0.7 0.877737
Target:  5'- -cGGUGgccgaGGUUCCGGUGACgGCGCu- -3'
miRNA:   3'- cuCUAUa----CCAGGGCUACUGgCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 220817 0.7 0.877737
Target:  5'- ----cGUGGUCCCGccgcUGGCCGUGCu- -3'
miRNA:   3'- cucuaUACCAGGGCu---ACUGGCGCGcg -5'
9381 3' -55.1 NC_002512.2 + 154215 0.7 0.862659
Target:  5'- aGGAUA-GGUCCCuauagguaccuagGAUagGACgCGCGCGCg -3'
miRNA:   3'- cUCUAUaCCAGGG-------------CUA--CUG-GCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 114233 0.7 0.862659
Target:  5'- -uGAUGUGGUCCucaucgaCGgcGACCGgcUGCGCg -3'
miRNA:   3'- cuCUAUACCAGG-------GCuaCUGGC--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.