miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9382 5' -54.7 NC_002512.2 + 224614 0.66 0.972235
Target:  5'- -gGUGCCGAccgg--GCUCGgggucgccgccGCGGCCu -3'
miRNA:   3'- aaCACGGCUuaacgaCGAGC-----------UGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 91391 0.66 0.959598
Target:  5'- ---cGCUGcGgcGCUGCgUGGCGGCCa -3'
miRNA:   3'- aacaCGGCuUaaCGACGaGCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 190131 0.66 0.963072
Target:  5'- ---aGCUGcg-UGCUGCUCGcCuGGCCc -3'
miRNA:   3'- aacaCGGCuuaACGACGAGCuG-CCGG- -5'
9382 5' -54.7 NC_002512.2 + 118639 0.66 0.963072
Target:  5'- cUGUGCacguuCGAAcaGCgGCU-GACGGCCg -3'
miRNA:   3'- aACACG-----GCUUaaCGaCGAgCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 219245 0.66 0.963072
Target:  5'- -cGUGCuCGGccgccucugGCUGCUCGucCGGCa -3'
miRNA:   3'- aaCACG-GCUuaa------CGACGAGCu-GCCGg -5'
9382 5' -54.7 NC_002512.2 + 150935 0.66 0.969385
Target:  5'- ---aGCCGGAcuuagGCUcCGGCGGCCg -3'
miRNA:   3'- aacaCGGCUUaacgaCGA-GCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 186795 0.66 0.969385
Target:  5'- ---aGCCGuccccGCUGCUCGcCGcGCCc -3'
miRNA:   3'- aacaCGGCuuaa-CGACGAGCuGC-CGG- -5'
9382 5' -54.7 NC_002512.2 + 145964 0.66 0.969385
Target:  5'- aUGcGCCGGGc-GCUGCUgGACgccugGGCCc -3'
miRNA:   3'- aACaCGGCUUaaCGACGAgCUG-----CCGG- -5'
9382 5' -54.7 NC_002512.2 + 184405 0.66 0.970549
Target:  5'- ---cGCCGGGggGC-GCUCGGCcuucuccgucgccucGGCCg -3'
miRNA:   3'- aacaCGGCUUaaCGaCGAGCUG---------------CCGG- -5'
9382 5' -54.7 NC_002512.2 + 145509 0.66 0.972235
Target:  5'- --cUGCCGGg--GCUGCUCcGGCucugcgcgucgGGCCg -3'
miRNA:   3'- aacACGGCUuaaCGACGAG-CUG-----------CCGG- -5'
9382 5' -54.7 NC_002512.2 + 185505 0.66 0.972235
Target:  5'- ---cGCCGg---GCUGCgCGGgGGCCu -3'
miRNA:   3'- aacaCGGCuuaaCGACGaGCUgCCGG- -5'
9382 5' -54.7 NC_002512.2 + 108470 0.66 0.972235
Target:  5'- ---cGCCGggUUcgcGCUGaacgUGACGGUCg -3'
miRNA:   3'- aacaCGGCuuAA---CGACga--GCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 215168 0.67 0.955905
Target:  5'- cUG-GCCGuccUGCUGCUCGGgGaGCg -3'
miRNA:   3'- aACaCGGCuuaACGACGAGCUgC-CGg -5'
9382 5' -54.7 NC_002512.2 + 202494 0.67 0.955905
Target:  5'- --cUGCCGAcucaGCaGUUCGGCGGCg -3'
miRNA:   3'- aacACGGCUuaa-CGaCGAGCUGCCGg -5'
9382 5' -54.7 NC_002512.2 + 158918 0.67 0.955905
Target:  5'- ---gGCCGAGUacgGCUucggcgggggcGC-CGGCGGCCu -3'
miRNA:   3'- aacaCGGCUUAa--CGA-----------CGaGCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 100998 0.67 0.955905
Target:  5'- gUUGUGUCGcagacaGCUGCccgUGGCGGUCa -3'
miRNA:   3'- -AACACGGCuuaa--CGACGa--GCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 72201 0.67 0.951988
Target:  5'- ---aGCCGGAUaGaCUGCUC--CGGCCa -3'
miRNA:   3'- aacaCGGCUUAaC-GACGAGcuGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 108403 0.67 0.947846
Target:  5'- ---cGCCGAugcugcUGCUGCUCGucugcgccgcccGgGGCCg -3'
miRNA:   3'- aacaCGGCUua----ACGACGAGC------------UgCCGG- -5'
9382 5' -54.7 NC_002512.2 + 95748 0.67 0.943473
Target:  5'- ---gGCCGGGacGC-GCgccgCGACGGCCg -3'
miRNA:   3'- aacaCGGCUUaaCGaCGa---GCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 211290 0.67 0.938868
Target:  5'- gUGcGCCGAG-UGCgGCaugCGGCGGUCc -3'
miRNA:   3'- aACaCGGCUUaACGaCGa--GCUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.