miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9382 5' -54.7 NC_002512.2 + 198269 0.79 0.38735
Target:  5'- -aGUGCCGGA--GCUGCUCGA-GGCUg -3'
miRNA:   3'- aaCACGGCUUaaCGACGAGCUgCCGG- -5'
9382 5' -54.7 NC_002512.2 + 223625 0.76 0.543336
Target:  5'- cUGUcGCUGG--UGCUGCUCGGCGGgCu -3'
miRNA:   3'- aACA-CGGCUuaACGACGAGCUGCCgG- -5'
9382 5' -54.7 NC_002512.2 + 98125 0.74 0.664473
Target:  5'- --uUGCCGGGgcGCUGgUCGucGCGGCCg -3'
miRNA:   3'- aacACGGCUUaaCGACgAGC--UGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 117889 0.72 0.72446
Target:  5'- ---cGCCGGGggcccgucGCUGCUCcACGGCCa -3'
miRNA:   3'- aacaCGGCUUaa------CGACGAGcUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 132092 0.71 0.78162
Target:  5'- ---aGCCGGAgcGCUcggaccgggGCUCGAgGGCCg -3'
miRNA:   3'- aacaCGGCUUaaCGA---------CGAGCUgCCGG- -5'
9382 5' -54.7 NC_002512.2 + 221757 0.7 0.825703
Target:  5'- ---cGUCGAAcgGCaGCUgGGCGGCCg -3'
miRNA:   3'- aacaCGGCUUaaCGaCGAgCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 112507 0.7 0.83403
Target:  5'- -cGUGCacguccagggaCGAGUUGCUGUUgcaGACGGCg -3'
miRNA:   3'- aaCACG-----------GCUUAACGACGAg--CUGCCGg -5'
9382 5' -54.7 NC_002512.2 + 176457 0.7 0.864711
Target:  5'- -gGUGUCGggUUccGCgGCUCucuucuccuggauGGCGGCCg -3'
miRNA:   3'- aaCACGGCuuAA--CGaCGAG-------------CUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 209933 0.69 0.879953
Target:  5'- --aUGCuCGAGgucuucgUGCUGCUCGACcgGGCg -3'
miRNA:   3'- aacACG-GCUUa------ACGACGAGCUG--CCGg -5'
9382 5' -54.7 NC_002512.2 + 224944 0.69 0.886877
Target:  5'- -cGUGCCGG--UGUcGCUCGGCuccGCCg -3'
miRNA:   3'- aaCACGGCUuaACGaCGAGCUGc--CGG- -5'
9382 5' -54.7 NC_002512.2 + 31674 0.69 0.886877
Target:  5'- cUGUGuCCGAucgGCUGUg-GGCGGUCa -3'
miRNA:   3'- aACAC-GGCUuaaCGACGagCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 115822 0.69 0.893579
Target:  5'- cUGUGCCacccggUGCUGCaCGACgcgGGCCc -3'
miRNA:   3'- aACACGGcuua--ACGACGaGCUG---CCGG- -5'
9382 5' -54.7 NC_002512.2 + 186464 0.69 0.900055
Target:  5'- ---cGCCuccgUGCUGCUCGGcCGGCg -3'
miRNA:   3'- aacaCGGcuuaACGACGAGCU-GCCGg -5'
9382 5' -54.7 NC_002512.2 + 136078 0.68 0.923644
Target:  5'- -gGUGgCGGcguuccUGCUGCUgcucgcgcuggCGGCGGCCa -3'
miRNA:   3'- aaCACgGCUua----ACGACGA-----------GCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 91350 0.68 0.928954
Target:  5'- --cUGCCa----GCUGCUCGACGGgCu -3'
miRNA:   3'- aacACGGcuuaaCGACGAGCUGCCgG- -5'
9382 5' -54.7 NC_002512.2 + 227613 0.68 0.928954
Target:  5'- ---gGCCGGAggGCggGCggCGGCGGCg -3'
miRNA:   3'- aacaCGGCUUaaCGa-CGa-GCUGCCGg -5'
9382 5' -54.7 NC_002512.2 + 121377 0.68 0.928954
Target:  5'- ---gGCCGGAgaGgaGggCGACGGCCg -3'
miRNA:   3'- aacaCGGCUUaaCgaCgaGCUGCCGG- -5'
9382 5' -54.7 NC_002512.2 + 134818 0.68 0.934029
Target:  5'- cUGcUGCCccagcUGCUGC-CGACGGCg -3'
miRNA:   3'- aAC-ACGGcuua-ACGACGaGCUGCCGg -5'
9382 5' -54.7 NC_002512.2 + 182456 0.68 0.934029
Target:  5'- -cGUGCgGGcgUGgUGCUCG-UGGCa -3'
miRNA:   3'- aaCACGgCUuaACgACGAGCuGCCGg -5'
9382 5' -54.7 NC_002512.2 + 211290 0.67 0.938868
Target:  5'- gUGcGCCGAG-UGCgGCaugCGGCGGUCc -3'
miRNA:   3'- aACaCGGCUUaACGaCGa--GCUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.