Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 190131 | 0.66 | 0.963072 |
Target: 5'- ---aGCUGcg-UGCUGCUCGcCuGGCCc -3' miRNA: 3'- aacaCGGCuuaACGACGAGCuG-CCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 198269 | 0.79 | 0.38735 |
Target: 5'- -aGUGCCGGA--GCUGCUCGA-GGCUg -3' miRNA: 3'- aaCACGGCUUaaCGACGAGCUgCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 211290 | 0.67 | 0.938868 |
Target: 5'- gUGcGCCGAG-UGCgGCaugCGGCGGUCc -3' miRNA: 3'- aACaCGGCUUaACGaCGa--GCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 95748 | 0.67 | 0.943473 |
Target: 5'- ---gGCCGGGacGC-GCgccgCGACGGCCg -3' miRNA: 3'- aacaCGGCUUaaCGaCGa---GCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 108403 | 0.67 | 0.947846 |
Target: 5'- ---cGCCGAugcugcUGCUGCUCGucugcgccgcccGgGGCCg -3' miRNA: 3'- aacaCGGCUua----ACGACGAGC------------UgCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 72201 | 0.67 | 0.951988 |
Target: 5'- ---aGCCGGAUaGaCUGCUC--CGGCCa -3' miRNA: 3'- aacaCGGCUUAaC-GACGAGcuGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 100998 | 0.67 | 0.955905 |
Target: 5'- gUUGUGUCGcagacaGCUGCccgUGGCGGUCa -3' miRNA: 3'- -AACACGGCuuaa--CGACGa--GCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 158918 | 0.67 | 0.955905 |
Target: 5'- ---gGCCGAGUacgGCUucggcgggggcGC-CGGCGGCCu -3' miRNA: 3'- aacaCGGCUUAa--CGA-----------CGaGCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 202494 | 0.67 | 0.955905 |
Target: 5'- --cUGCCGAcucaGCaGUUCGGCGGCg -3' miRNA: 3'- aacACGGCUuaa-CGaCGAGCUGCCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 215168 | 0.67 | 0.955905 |
Target: 5'- cUG-GCCGuccUGCUGCUCGGgGaGCg -3' miRNA: 3'- aACaCGGCuuaACGACGAGCUgC-CGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 91391 | 0.66 | 0.959598 |
Target: 5'- ---cGCUGcGgcGCUGCgUGGCGGCCa -3' miRNA: 3'- aacaCGGCuUaaCGACGaGCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 108470 | 0.66 | 0.972235 |
Target: 5'- ---cGCCGggUUcgcGCUGaacgUGACGGUCg -3' miRNA: 3'- aacaCGGCuuAA---CGACga--GCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 118639 | 0.66 | 0.963072 |
Target: 5'- cUGUGCacguuCGAAcaGCgGCU-GACGGCCg -3' miRNA: 3'- aACACG-----GCUUaaCGaCGAgCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 219245 | 0.66 | 0.963072 |
Target: 5'- -cGUGCuCGGccgccucugGCUGCUCGucCGGCa -3' miRNA: 3'- aaCACG-GCUuaa------CGACGAGCu-GCCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 150935 | 0.66 | 0.969385 |
Target: 5'- ---aGCCGGAcuuagGCUcCGGCGGCCg -3' miRNA: 3'- aacaCGGCUUaacgaCGA-GCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 186795 | 0.66 | 0.969385 |
Target: 5'- ---aGCCGuccccGCUGCUCGcCGcGCCc -3' miRNA: 3'- aacaCGGCuuaa-CGACGAGCuGC-CGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 145964 | 0.66 | 0.969385 |
Target: 5'- aUGcGCCGGGc-GCUGCUgGACgccugGGCCc -3' miRNA: 3'- aACaCGGCUUaaCGACGAgCUG-----CCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 184405 | 0.66 | 0.970549 |
Target: 5'- ---cGCCGGGggGC-GCUCGGCcuucuccgucgccucGGCCg -3' miRNA: 3'- aacaCGGCUUaaCGaCGAGCUG---------------CCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 145509 | 0.66 | 0.972235 |
Target: 5'- --cUGCCGGg--GCUGCUCcGGCucugcgcgucgGGCCg -3' miRNA: 3'- aacACGGCUuaaCGACGAG-CUG-----------CCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 185505 | 0.66 | 0.972235 |
Target: 5'- ---cGCCGg---GCUGCgCGGgGGCCu -3' miRNA: 3'- aacaCGGCuuaaCGACGaGCUgCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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