Results 1 - 20 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 102718 | 0.76 | 0.352023 |
Target: 5'- uUAGUGGCgGCCuCGCGGCagucccggaucaCGAUCGGACu -3' miRNA: 3'- -GUCACUGgCGG-GUGUCG------------GCUAGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 102487 | 0.75 | 0.407081 |
Target: 5'- gCGGUGGCgGuCCCGCAGgCGG-CGGACg -3' miRNA: 3'- -GUCACUGgC-GGGUGUCgGCUaGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 130072 | 0.73 | 0.495297 |
Target: 5'- aCGGUGGCCGCCagcucguaguacccgACGGCCGAgucgaaGGGCg -3' miRNA: 3'- -GUCACUGGCGGg--------------UGUCGGCUag----CCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 102674 | 0.72 | 0.569873 |
Target: 5'- gGGcGGCCGCCCGCuGuCCGGggaGGACg -3' miRNA: 3'- gUCaCUGGCGGGUGuC-GGCUag-CCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 124303 | 0.71 | 0.618513 |
Target: 5'- ---cGACCGCgCGgAGCUGAUCGGGg -3' miRNA: 3'- gucaCUGGCGgGUgUCGGCUAGCCUg -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 150068 | 0.71 | 0.618513 |
Target: 5'- gGGgggGACCGCcgCCGCcGCCG-UCGGGCg -3' miRNA: 3'- gUCa--CUGGCG--GGUGuCGGCuAGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 214244 | 0.71 | 0.63808 |
Target: 5'- uCGGcucGCCGCCCGCGGCCGA--GGAg -3' miRNA: 3'- -GUCac-UGGCGGGUGUCGGCUagCCUg -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 219597 | 0.7 | 0.677103 |
Target: 5'- uGGUGGCCGaCUCGCuGcCCGGcuucUCGGGCa -3' miRNA: 3'- gUCACUGGC-GGGUGuC-GGCU----AGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 92666 | 0.7 | 0.682922 |
Target: 5'- cCGGgacGGCCGCCCGC-GCCGGgcgcgccgcccacCGGGCg -3' miRNA: 3'- -GUCa--CUGGCGGGUGuCGGCUa------------GCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 172896 | 0.7 | 0.657629 |
Target: 5'- ---cGGCCGCCCACGGCUG-UCccccguggGGACu -3' miRNA: 3'- gucaCUGGCGGGUGUCGGCuAG--------CCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 149148 | 0.7 | 0.667379 |
Target: 5'- cCGG-GACCGCCgCGgGGCCGGUgccgcccgCGGGCc -3' miRNA: 3'- -GUCaCUGGCGG-GUgUCGGCUA--------GCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 152368 | 0.69 | 0.743791 |
Target: 5'- aCGGaGACCGgCCGUGGCCGGUCGuaGACa -3' miRNA: 3'- -GUCaCUGGCgGGUGUCGGCUAGC--CUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 216263 | 0.69 | 0.734467 |
Target: 5'- aGGUGcGCCGCCCGCAccGCCaGcUCGGuCg -3' miRNA: 3'- gUCAC-UGGCGGGUGU--CGG-CuAGCCuG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 213230 | 0.69 | 0.715585 |
Target: 5'- -cGUGGCCGCCaACGgcGCCGGcCGGAUc -3' miRNA: 3'- guCACUGGCGGgUGU--CGGCUaGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 183495 | 0.69 | 0.725063 |
Target: 5'- ---gGGCCGCCUACGGCCGcgaGGGg -3' miRNA: 3'- gucaCUGGCGGGUGUCGGCuagCCUg -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 77712 | 0.68 | 0.805259 |
Target: 5'- aAGUGaacgagacGCCGCCCACGaguacccGCuCGcaAUCGGACa -3' miRNA: 3'- gUCAC--------UGGCGGGUGU-------CG-GC--UAGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 227088 | 0.68 | 0.806106 |
Target: 5'- gGGUcccGCCGgCCGcCGGCCGgGUCGGGCu -3' miRNA: 3'- gUCAc--UGGCgGGU-GUCGGC-UAGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 215114 | 0.68 | 0.762161 |
Target: 5'- gCGGccGACCGCCagaACGGCCGGgguccgCGcGACg -3' miRNA: 3'- -GUCa-CUGGCGGg--UGUCGGCUa-----GC-CUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 193761 | 0.68 | 0.759431 |
Target: 5'- gCGGUcgUCGCCUccguccucuguuuuACAGCCGGUUGGGCc -3' miRNA: 3'- -GUCAcuGGCGGG--------------UGUCGGCUAGCCUG- -5' |
|||||||
9383 | 3' | -58.8 | NC_002512.2 | + | 122079 | 0.68 | 0.762161 |
Target: 5'- aAGUGGCUGCCgCACGcGCCGGacgcgaggUCGGcGCu -3' miRNA: 3'- gUCACUGGCGG-GUGU-CGGCU--------AGCC-UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home