miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9383 3' -58.8 NC_002512.2 + 169325 0.67 0.85402
Target:  5'- cCAGaaAUCGCguuCCACGGCCGA-CGGAUa -3'
miRNA:   3'- -GUCacUGGCG---GGUGUCGGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 221249 0.67 0.85402
Target:  5'- ---cGGCCGgCCGCGGCgGAagUCGGGg -3'
miRNA:   3'- gucaCUGGCgGGUGUCGgCU--AGCCUg -5'
9383 3' -58.8 NC_002512.2 + 176432 0.67 0.846458
Target:  5'- gGGUGGCCaucuGCgCCGCGGUCGGggugUCGGGu -3'
miRNA:   3'- gUCACUGG----CG-GGUGUCGGCU----AGCCUg -5'
9383 3' -58.8 NC_002512.2 + 179230 0.67 0.846458
Target:  5'- --uUGugCGCCaGCAGCUGG-CGGGCc -3'
miRNA:   3'- gucACugGCGGgUGUCGGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 201924 0.67 0.846458
Target:  5'- ---cGGCCGCCCAUcGgCGA-CGGGCc -3'
miRNA:   3'- gucaCUGGCGGGUGuCgGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 222517 0.67 0.846458
Target:  5'- --cUGGCCGCCCgccGCGGCCGccgucgcggUGGGCc -3'
miRNA:   3'- gucACUGGCGGG---UGUCGGCua-------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 113660 0.67 0.838717
Target:  5'- ---cGGCCGgCCGCGagggugcgcGCgGGUCGGACg -3'
miRNA:   3'- gucaCUGGCgGGUGU---------CGgCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 90866 0.67 0.838717
Target:  5'- ----aGCCGUCCGC-GCCGccGUCGGACc -3'
miRNA:   3'- gucacUGGCGGGUGuCGGC--UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 184680 0.67 0.838717
Target:  5'- uCGGcGGCCGUCCGCGccGCCGGUCccGGuCg -3'
miRNA:   3'- -GUCaCUGGCGGGUGU--CGGCUAG--CCuG- -5'
9383 3' -58.8 NC_002512.2 + 145695 0.67 0.838717
Target:  5'- gAGUGGCUGCgCCGCuggucccGCCGAaccUGGACc -3'
miRNA:   3'- gUCACUGGCG-GGUGu------CGGCUa--GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 35606 0.67 0.830805
Target:  5'- uGGUGGCCGuUCCugAagaugacaaacGCCGAgUUGGACg -3'
miRNA:   3'- gUCACUGGC-GGGugU-----------CGGCU-AGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 128840 0.67 0.830805
Target:  5'- gCAGcUGcACCGCUCGgGcGCCGcgCGGGCc -3'
miRNA:   3'- -GUC-AC-UGGCGGGUgU-CGGCuaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 150409 0.67 0.830805
Target:  5'- ---cGaACCGCCCACGGgCGcgCGGuCg -3'
miRNA:   3'- gucaC-UGGCGGGUGUCgGCuaGCCuG- -5'
9383 3' -58.8 NC_002512.2 + 212364 0.67 0.814493
Target:  5'- gAGcUGGCCGCCUAC-GCCGAcgCcGACg -3'
miRNA:   3'- gUC-ACUGGCGGGUGuCGGCUa-GcCUG- -5'
9383 3' -58.8 NC_002512.2 + 92998 0.67 0.814493
Target:  5'- uGGUGGCCGUCuCGguGgCGGaCGGGCa -3'
miRNA:   3'- gUCACUGGCGG-GUguCgGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 227088 0.68 0.806106
Target:  5'- gGGUcccGCCGgCCGcCGGCCGgGUCGGGCu -3'
miRNA:   3'- gUCAc--UGGCgGGU-GUCGGC-UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 77712 0.68 0.805259
Target:  5'- aAGUGaacgagacGCCGCCCACGaguacccGCuCGcaAUCGGACa -3'
miRNA:   3'- gUCAC--------UGGCGGGUGU-------CG-GC--UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 122393 0.68 0.797575
Target:  5'- gCAGaGACCGCUgcgGGCCGGUCGcGGCg -3'
miRNA:   3'- -GUCaCUGGCGGgugUCGGCUAGC-CUG- -5'
9383 3' -58.8 NC_002512.2 + 105059 0.68 0.788907
Target:  5'- cCGGUGuCCGgCaCGCAGCCGAagaagccggcggUCGGGu -3'
miRNA:   3'- -GUCACuGGCgG-GUGUCGGCU------------AGCCUg -5'
9383 3' -58.8 NC_002512.2 + 224118 0.68 0.788907
Target:  5'- uGGUGACCaucucggccgugGaCCCGC-GCCGGgaggCGGACg -3'
miRNA:   3'- gUCACUGG------------C-GGGUGuCGGCUa---GCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.