miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 92990 0.72 0.851399
Target:  5'- gCCcGACCUgguggccgucucgguGGC-GGACGGGCAGCUGUg -3'
miRNA:   3'- -GGaCUGGG---------------CUGuUCUGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 160819 0.72 0.856028
Target:  5'- gCCgc-CCCGGCAccagcAGGCGGGCGGCcgGCg -3'
miRNA:   3'- -GGacuGGGCUGU-----UCUGUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 216659 0.72 0.863585
Target:  5'- --cGuCCCG-CAGcACGGGCAGCUGCa -3'
miRNA:   3'- ggaCuGGGCuGUUcUGUCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 205662 0.72 0.870939
Target:  5'- --gGGCCCGACGccuCGGACAGCUccgGCg -3'
miRNA:   3'- ggaCUGGGCUGUucuGUCUGUCGA---CG- -5'
9385 3' -53.2 NC_002512.2 + 114882 0.71 0.878084
Target:  5'- gCCUGACCCaccuGAagGAGACguucgaGGACAcGCUGCu -3'
miRNA:   3'- -GGACUGGG----CUg-UUCUG------UCUGU-CGACG- -5'
9385 3' -53.2 NC_002512.2 + 115525 0.71 0.89107
Target:  5'- gCUGACCUucACGcAGACGGACAuggacguGCUGCg -3'
miRNA:   3'- gGACUGGGc-UGU-UCUGUCUGU-------CGACG- -5'
9385 3' -53.2 NC_002512.2 + 147609 0.71 0.891731
Target:  5'- gCCUcGACCCGACccucgacgGGGGCGacgacGACGGCgGCg -3'
miRNA:   3'- -GGA-CUGGGCUG--------UUCUGU-----CUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 171819 0.71 0.898224
Target:  5'- uCCUGcuGCCCGGCAuccgguaccgcgGGACGGucCGGCcGCg -3'
miRNA:   3'- -GGAC--UGGGCUGU------------UCUGUCu-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 205706 0.71 0.904492
Target:  5'- --cGACaCCGGC--GACAGGCGGCgGCa -3'
miRNA:   3'- ggaCUG-GGCUGuuCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 197659 0.71 0.910533
Target:  5'- cUCUGGCCCGACGAGGUGGAC-GCc-- -3'
miRNA:   3'- -GGACUGGGCUGUUCUGUCUGuCGacg -5'
9385 3' -53.2 NC_002512.2 + 158984 0.7 0.916343
Target:  5'- --cGGCCaCGGCGGGGCggAGGCGGCgGCc -3'
miRNA:   3'- ggaCUGG-GCUGUUCUG--UCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 161823 0.7 0.916343
Target:  5'- aCCUGGCCCucugcuccGACGAGGCuuccGGACAcgGCgucgGCg -3'
miRNA:   3'- -GGACUGGG--------CUGUUCUG----UCUGU--CGa---CG- -5'
9385 3' -53.2 NC_002512.2 + 105641 0.7 0.929343
Target:  5'- uCCgaGACCCGGcCGAGguagggcgagccgcaGCAGACGGC-GCg -3'
miRNA:   3'- -GGa-CUGGGCU-GUUC---------------UGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 211931 0.7 0.929343
Target:  5'- --gGAcCCCGACGGGACguccguggacgagagGGuCGGCUGCu -3'
miRNA:   3'- ggaCU-GGGCUGUUCUG---------------UCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 137235 0.7 0.932384
Target:  5'- cCCgGuCCCGACgAGGACAccGGCGGCgaGCg -3'
miRNA:   3'- -GGaCuGGGCUG-UUCUGU--CUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 92606 0.7 0.932384
Target:  5'- cCCgaGGCCggucgCGACGacGGACGGACGGCgGCc -3'
miRNA:   3'- -GGa-CUGG-----GCUGU--UCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 216234 0.69 0.941917
Target:  5'- gCUGgaGCCgCGGCGAGACGGucgucauCAGgUGCg -3'
miRNA:   3'- gGAC--UGG-GCUGUUCUGUCu------GUCgACG- -5'
9385 3' -53.2 NC_002512.2 + 105391 0.69 0.941917
Target:  5'- --cGACCCGGCGAcGCucuuGGGCGGCaGCa -3'
miRNA:   3'- ggaCUGGGCUGUUcUG----UCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 116511 0.69 0.945906
Target:  5'- gCUGGCCCuggugcgguacacGGcCAAGACGuGcCAGCUGCu -3'
miRNA:   3'- gGACUGGG-------------CU-GUUCUGU-CuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 122323 0.69 0.945906
Target:  5'- aCgUGGCCCugaGGCGggGGACGGACaacguccuccagaAGCUGCc -3'
miRNA:   3'- -GgACUGGG---CUGU--UCUGUCUG-------------UCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.