miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 5' -52.1 NC_002512.2 + 208584 0.66 0.99794
Target:  5'- cGACgCGCagcgGGUCCgggACGagGUCGAgguUCCg -3'
miRNA:   3'- uCUG-GUG----CCAGGa--UGCaaCAGCU---AGG- -5'
9385 5' -52.1 NC_002512.2 + 102347 0.66 0.99794
Target:  5'- -aGCCG-GGUCCggGCGUcgGUCG-UCCg -3'
miRNA:   3'- ucUGGUgCCAGGa-UGCAa-CAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 100407 0.66 0.99794
Target:  5'- uGGCgACGGcgUCCU-CGUcgUGUCG-UCCg -3'
miRNA:   3'- uCUGgUGCC--AGGAuGCA--ACAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 132525 0.66 0.997721
Target:  5'- -cGCCGCGGUCCccgcuccgcgggcgGCGccGUCGGccucUCCg -3'
miRNA:   3'- ucUGGUGCCAGGa-------------UGCaaCAGCU----AGG- -5'
9385 5' -52.1 NC_002512.2 + 96798 0.66 0.997565
Target:  5'- uGGAUCGgGGaaCCUgaagACGUggacgcUGUCGAUCCu -3'
miRNA:   3'- -UCUGGUgCCa-GGA----UGCA------ACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 93508 0.66 0.997565
Target:  5'- cGGCCAUGG-CgUGCG-UGUCGcuggCCa -3'
miRNA:   3'- uCUGGUGCCaGgAUGCaACAGCua--GG- -5'
9385 5' -52.1 NC_002512.2 + 169092 0.66 0.997565
Target:  5'- cGGCC-CGcGUCCUcguccucgcgggGCGU--UCGGUCCg -3'
miRNA:   3'- uCUGGuGC-CAGGA------------UGCAacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 199189 0.66 0.997565
Target:  5'- cGGCCuccaugaGGUCgUACGgguUGUCG-UCCg -3'
miRNA:   3'- uCUGGug-----CCAGgAUGCa--ACAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 155380 0.66 0.997135
Target:  5'- gGGACCGCgaggcuggcgaGGUCCUcucCGUccUGUCGcUCUg -3'
miRNA:   3'- -UCUGGUG-----------CCAGGAu--GCA--ACAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 129706 0.66 0.997135
Target:  5'- cGACUcgaGGUaaCCgGgGUUGUCGAUCCc -3'
miRNA:   3'- uCUGGug-CCA--GGaUgCAACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 119569 0.66 0.996644
Target:  5'- cGGACCGCGGgagCCcgGCGgguccccUCGcgCCa -3'
miRNA:   3'- -UCUGGUGCCa--GGa-UGCaac----AGCuaGG- -5'
9385 5' -52.1 NC_002512.2 + 74430 0.66 0.996644
Target:  5'- cGACCgACGGUCCcgGCGc-GUCGcUCa -3'
miRNA:   3'- uCUGG-UGCCAGGa-UGCaaCAGCuAGg -5'
9385 5' -52.1 NC_002512.2 + 94405 0.66 0.996644
Target:  5'- aGGACgGCGGUCUUgGCGcuccaGUCGG-CCg -3'
miRNA:   3'- -UCUGgUGCCAGGA-UGCaa---CAGCUaGG- -5'
9385 5' -52.1 NC_002512.2 + 114166 0.66 0.996644
Target:  5'- cGGGCC-CGGUCCUccucggugGCGccggcGUCGggCCc -3'
miRNA:   3'- -UCUGGuGCCAGGA--------UGCaa---CAGCuaGG- -5'
9385 5' -52.1 NC_002512.2 + 214952 0.66 0.995453
Target:  5'- uGGCCGCGGaCgcACGggGUCcgGAUCCa -3'
miRNA:   3'- uCUGGUGCCaGgaUGCaaCAG--CUAGG- -5'
9385 5' -52.1 NC_002512.2 + 218231 0.67 0.994739
Target:  5'- cGGGCCGCGGcgCCgauaUAUGUccggGUCGGcgUCCu -3'
miRNA:   3'- -UCUGGUGCCa-GG----AUGCAa---CAGCU--AGG- -5'
9385 5' -52.1 NC_002512.2 + 224549 0.67 0.994739
Target:  5'- gGGACCAUGG-CCUuccccaUCGAUCCc -3'
miRNA:   3'- -UCUGGUGCCaGGAugcaacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 201865 0.67 0.994739
Target:  5'- gGGGCCuGCGGUCCgaggACGgcGgCGGcuucUCCg -3'
miRNA:   3'- -UCUGG-UGCCAGGa---UGCaaCaGCU----AGG- -5'
9385 5' -52.1 NC_002512.2 + 92389 0.67 0.994739
Target:  5'- uGACguCGGUCCUGCaGUucccgcugcUGgaucCGAUCCc -3'
miRNA:   3'- uCUGguGCCAGGAUG-CA---------ACa---GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 51143 0.67 0.994739
Target:  5'- gGGACCACGGUCgcuagggacauCUgugauaaucccACGUaucGUCuGAUCCg -3'
miRNA:   3'- -UCUGGUGCCAG-----------GA-----------UGCAa--CAG-CUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.