miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 5' -52.1 NC_002512.2 + 111852 0.78 0.627105
Target:  5'- cGGGCCACGGccUCCUugGUcuUGUCGGUg- -3'
miRNA:   3'- -UCUGGUGCC--AGGAugCA--ACAGCUAgg -5'
9385 5' -52.1 NC_002512.2 + 221442 0.76 0.755502
Target:  5'- cGGACCGCGG-CCgggGCGcgGUCG-UCCg -3'
miRNA:   3'- -UCUGGUGCCaGGa--UGCaaCAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 216586 0.76 0.764884
Target:  5'- gAGGCCA-GGcCCUGgG-UGUCGAUCCg -3'
miRNA:   3'- -UCUGGUgCCaGGAUgCaACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 185256 0.75 0.783295
Target:  5'- cGACCGCGGUCuCUACucgGUCGucgCCa -3'
miRNA:   3'- uCUGGUGCCAG-GAUGcaaCAGCua-GG- -5'
9385 5' -52.1 NC_002512.2 + 165418 0.75 0.818472
Target:  5'- aGGGCCgGCGGgCCUACGagaucggcGUCGAUCCc -3'
miRNA:   3'- -UCUGG-UGCCaGGAUGCaa------CAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 207210 0.73 0.880511
Target:  5'- uGGAagCGCGaGUCCUGCGUggcgaaGUCGAUCg -3'
miRNA:   3'- -UCUg-GUGC-CAGGAUGCAa-----CAGCUAGg -5'
9385 5' -52.1 NC_002512.2 + 152188 0.71 0.929009
Target:  5'- aGGACCGgGGUCCU-CGgagagUGgacccCGGUCCu -3'
miRNA:   3'- -UCUGGUgCCAGGAuGCa----ACa----GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 113370 0.71 0.942958
Target:  5'- cGACCACGGUCUUccuguggaccaggGCGUUGcgCGcgCUc -3'
miRNA:   3'- uCUGGUGCCAGGA-------------UGCAACa-GCuaGG- -5'
9385 5' -52.1 NC_002512.2 + 90689 0.7 0.955748
Target:  5'- aGGGCCA-GGUCCUcgACGgcGUCGGcgugacaggggUCCa -3'
miRNA:   3'- -UCUGGUgCCAGGA--UGCaaCAGCU-----------AGG- -5'
9385 5' -52.1 NC_002512.2 + 90654 0.7 0.959419
Target:  5'- cGGCCGCGGUCU--CGgaGUCGGcggCCg -3'
miRNA:   3'- uCUGGUGCCAGGauGCaaCAGCUa--GG- -5'
9385 5' -52.1 NC_002512.2 + 89850 0.7 0.969162
Target:  5'- cGGCC-CGGUUCUGCGUgcggUGAUCg -3'
miRNA:   3'- uCUGGuGCCAGGAUGCAaca-GCUAGg -5'
9385 5' -52.1 NC_002512.2 + 109953 0.7 0.969162
Target:  5'- cGAUCGCGGaCUgcGCGUcgcacaugcuccUGUCGAUCCu -3'
miRNA:   3'- uCUGGUGCCaGGa-UGCA------------ACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 218469 0.69 0.97465
Target:  5'- cGGACCGCGGUCaucuccuCGUcccgcggGUCG-UCCg -3'
miRNA:   3'- -UCUGGUGCCAGgau----GCAa------CAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 173396 0.69 0.97465
Target:  5'- gGGACCGucGUCCUGCGggaccucuccGUCGAUCg -3'
miRNA:   3'- -UCUGGUgcCAGGAUGCaa--------CAGCUAGg -5'
9385 5' -52.1 NC_002512.2 + 208147 0.69 0.97711
Target:  5'- cAGAUCggaGCGGUCC-GCGcgGUCcGGUCCu -3'
miRNA:   3'- -UCUGG---UGCCAGGaUGCaaCAG-CUAGG- -5'
9385 5' -52.1 NC_002512.2 + 144518 0.69 0.97939
Target:  5'- cGGACU-CGGUCC-GCGUgGgcgCGGUCCu -3'
miRNA:   3'- -UCUGGuGCCAGGaUGCAaCa--GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 158310 0.69 0.97939
Target:  5'- aAGGCCGCGGUCgUcCGgcG-CGAgUCCg -3'
miRNA:   3'- -UCUGGUGCCAGgAuGCaaCaGCU-AGG- -5'
9385 5' -52.1 NC_002512.2 + 34910 0.69 0.97939
Target:  5'- -aGCCAUGGacgUCCUAUGcgcUCGAUCCg -3'
miRNA:   3'- ucUGGUGCC---AGGAUGCaacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 182691 0.69 0.981497
Target:  5'- gGGGCCGgGcGUCUUccuCGUcuauuagaUGUCGGUCCg -3'
miRNA:   3'- -UCUGGUgC-CAGGAu--GCA--------ACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 73904 0.68 0.983438
Target:  5'- cGGACCgcGCGGUCCaaGCGcUGUCGGa-- -3'
miRNA:   3'- -UCUGG--UGCCAGGa-UGCaACAGCUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.