miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 5' -52.1 NC_002512.2 + 34910 0.69 0.97939
Target:  5'- -aGCCAUGGacgUCCUAUGcgcUCGAUCCg -3'
miRNA:   3'- ucUGGUGCC---AGGAUGCaacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 51143 0.67 0.994739
Target:  5'- gGGACCACGGUCgcuagggacauCUgugauaaucccACGUaucGUCuGAUCCg -3'
miRNA:   3'- -UCUGGUGCCAG-----------GA-----------UGCAa--CAG-CUAGG- -5'
9385 5' -52.1 NC_002512.2 + 73904 0.68 0.983438
Target:  5'- cGGACCgcGCGGUCCaaGCGcUGUCGGa-- -3'
miRNA:   3'- -UCUGG--UGCCAGGa-UGCaACAGCUagg -5'
9385 5' -52.1 NC_002512.2 + 74430 0.66 0.996644
Target:  5'- cGACCgACGGUCCcgGCGc-GUCGcUCa -3'
miRNA:   3'- uCUGG-UGCCAGGa-UGCaaCAGCuAGg -5'
9385 5' -52.1 NC_002512.2 + 82266 0.68 0.983438
Target:  5'- aGGAUCGCacgccagcgacaGGUCCgcCGUcGUCGAUCUu -3'
miRNA:   3'- -UCUGGUG------------CCAGGauGCAaCAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 89850 0.7 0.969162
Target:  5'- cGGCC-CGGUUCUGCGUgcggUGAUCg -3'
miRNA:   3'- uCUGGuGCCAGGAUGCAaca-GCUAGg -5'
9385 5' -52.1 NC_002512.2 + 90654 0.7 0.959419
Target:  5'- cGGCCGCGGUCU--CGgaGUCGGcggCCg -3'
miRNA:   3'- uCUGGUGCCAGGauGCaaCAGCUa--GG- -5'
9385 5' -52.1 NC_002512.2 + 90689 0.7 0.955748
Target:  5'- aGGGCCA-GGUCCUcgACGgcGUCGGcgugacaggggUCCa -3'
miRNA:   3'- -UCUGGUgCCAGGA--UGCaaCAGCU-----------AGG- -5'
9385 5' -52.1 NC_002512.2 + 92389 0.67 0.994739
Target:  5'- uGACguCGGUCCUGCaGUucccgcugcUGgaucCGAUCCc -3'
miRNA:   3'- uCUGguGCCAGGAUG-CA---------ACa---GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 93508 0.66 0.997565
Target:  5'- cGGCCAUGG-CgUGCG-UGUCGcuggCCa -3'
miRNA:   3'- uCUGGUGCCaGgAUGCaACAGCua--GG- -5'
9385 5' -52.1 NC_002512.2 + 94405 0.66 0.996644
Target:  5'- aGGACgGCGGUCUUgGCGcuccaGUCGG-CCg -3'
miRNA:   3'- -UCUGgUGCCAGGA-UGCaa---CAGCUaGG- -5'
9385 5' -52.1 NC_002512.2 + 96798 0.66 0.997565
Target:  5'- uGGAUCGgGGaaCCUgaagACGUggacgcUGUCGAUCCu -3'
miRNA:   3'- -UCUGGUgCCa-GGA----UGCA------ACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 100070 0.67 0.99304
Target:  5'- gGGGCCGCGGgCCggggACGgaG-CGGUCa -3'
miRNA:   3'- -UCUGGUGCCaGGa---UGCaaCaGCUAGg -5'
9385 5' -52.1 NC_002512.2 + 100407 0.66 0.99794
Target:  5'- uGGCgACGGcgUCCU-CGUcgUGUCG-UCCg -3'
miRNA:   3'- uCUGgUGCC--AGGAuGCA--ACAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 102347 0.66 0.99794
Target:  5'- -aGCCG-GGUCCggGCGUcgGUCG-UCCg -3'
miRNA:   3'- ucUGGUgCCAGGa-UGCAa-CAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 103162 0.68 0.988344
Target:  5'- cGGCguCGGUC--ACGUUGUugUGAUCCa -3'
miRNA:   3'- uCUGguGCCAGgaUGCAACA--GCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 109953 0.7 0.969162
Target:  5'- cGAUCGCGGaCUgcGCGUcgcacaugcuccUGUCGAUCCu -3'
miRNA:   3'- uCUGGUGCCaGGa-UGCA------------ACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 111852 0.78 0.627105
Target:  5'- cGGGCCACGGccUCCUugGUcuUGUCGGUg- -3'
miRNA:   3'- -UCUGGUGCC--AGGAugCA--ACAGCUAgg -5'
9385 5' -52.1 NC_002512.2 + 113370 0.71 0.942958
Target:  5'- cGACCACGGUCUUccuguggaccaggGCGUUGcgCGcgCUc -3'
miRNA:   3'- uCUGGUGCCAGGA-------------UGCAACa-GCuaGG- -5'
9385 5' -52.1 NC_002512.2 + 114166 0.66 0.996644
Target:  5'- cGGGCC-CGGUCCUccucggugGCGccggcGUCGggCCc -3'
miRNA:   3'- -UCUGGuGCCAGGA--------UGCaa---CAGCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.