Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 119569 | 0.66 | 0.996644 |
Target: 5'- cGGACCGCGGgagCCcgGCGgguccccUCGcgCCa -3' miRNA: 3'- -UCUGGUGCCa--GGa-UGCaac----AGCuaGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 126980 | 0.68 | 0.985221 |
Target: 5'- gGGuCCGCGGUCCUcucccaGCGcggGUCGuacCCg -3' miRNA: 3'- -UCuGGUGCCAGGA------UGCaa-CAGCua-GG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 128306 | 0.68 | 0.985221 |
Target: 5'- cGACCGCGGggacCCUACGc--UCGA-CCu -3' miRNA: 3'- uCUGGUGCCa---GGAUGCaacAGCUaGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 129238 | 0.67 | 0.990929 |
Target: 5'- cGAUCGCGGgacugCUGCGcgGggCGAUCCa -3' miRNA: 3'- uCUGGUGCCag---GAUGCaaCa-GCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 129706 | 0.66 | 0.997135 |
Target: 5'- cGACUcgaGGUaaCCgGgGUUGUCGAUCCc -3' miRNA: 3'- uCUGGug-CCA--GGaUgCAACAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 132525 | 0.66 | 0.997721 |
Target: 5'- -cGCCGCGGUCCccgcuccgcgggcgGCGccGUCGGccucUCCg -3' miRNA: 3'- ucUGGUGCCAGGa-------------UGCaaCAGCU----AGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 144518 | 0.69 | 0.97939 |
Target: 5'- cGGACU-CGGUCC-GCGUgGgcgCGGUCCu -3' miRNA: 3'- -UCUGGuGCCAGGaUGCAaCa--GCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 151047 | 0.68 | 0.986379 |
Target: 5'- cGGCCcgucacGCGGUCCUcgacggcgggggauGCGgucUCGGUCCg -3' miRNA: 3'- uCUGG------UGCCAGGA--------------UGCaacAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 152188 | 0.71 | 0.929009 |
Target: 5'- aGGACCGgGGUCCU-CGgagagUGgacccCGGUCCu -3' miRNA: 3'- -UCUGGUgCCAGGAuGCa----ACa----GCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 155380 | 0.66 | 0.997135 |
Target: 5'- gGGACCGCgaggcuggcgaGGUCCUcucCGUccUGUCGcUCUg -3' miRNA: 3'- -UCUGGUG-----------CCAGGAu--GCA--ACAGCuAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 155680 | 0.68 | 0.986854 |
Target: 5'- gGGACCGCGGcCC-ACGgacGUCGccgCCc -3' miRNA: 3'- -UCUGGUGCCaGGaUGCaa-CAGCua-GG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 158310 | 0.69 | 0.97939 |
Target: 5'- aAGGCCGCGGUCgUcCGgcG-CGAgUCCg -3' miRNA: 3'- -UCUGGUGCCAGgAuGCaaCaGCU-AGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 165418 | 0.75 | 0.818472 |
Target: 5'- aGGGCCgGCGGgCCUACGagaucggcGUCGAUCCc -3' miRNA: 3'- -UCUGG-UGCCaGGAUGCaa------CAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 169092 | 0.66 | 0.997565 |
Target: 5'- cGGCC-CGcGUCCUcguccucgcgggGCGU--UCGGUCCg -3' miRNA: 3'- uCUGGuGC-CAGGA------------UGCAacAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 173396 | 0.69 | 0.97465 |
Target: 5'- gGGACCGucGUCCUGCGggaccucuccGUCGAUCg -3' miRNA: 3'- -UCUGGUgcCAGGAUGCaa--------CAGCUAGg -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 182691 | 0.69 | 0.981497 |
Target: 5'- gGGGCCGgGcGUCUUccuCGUcuauuagaUGUCGGUCCg -3' miRNA: 3'- -UCUGGUgC-CAGGAu--GCA--------ACAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 184212 | 0.68 | 0.988344 |
Target: 5'- cGGACCGCgGGUUCUcucUGggGUCGA-CCg -3' miRNA: 3'- -UCUGGUG-CCAGGAu--GCaaCAGCUaGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 185256 | 0.75 | 0.783295 |
Target: 5'- cGACCGCGGUCuCUACucgGUCGucgCCa -3' miRNA: 3'- uCUGGUGCCAG-GAUGcaaCAGCua-GG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 193248 | 0.68 | 0.988344 |
Target: 5'- cGACgGCGGUUCUACGccUG-CGcgCCc -3' miRNA: 3'- uCUGgUGCCAGGAUGCa-ACaGCuaGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 195049 | 0.67 | 0.993937 |
Target: 5'- -cGCCGCGGcCCgcggGCGggaggGUCG-UCCg -3' miRNA: 3'- ucUGGUGCCaGGa---UGCaa---CAGCuAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home