Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 224549 | 0.67 | 0.994739 |
Target: 5'- gGGACCAUGG-CCUuccccaUCGAUCCc -3' miRNA: 3'- -UCUGGUGCCaGGAugcaacAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 221442 | 0.76 | 0.755502 |
Target: 5'- cGGACCGCGG-CCgggGCGcgGUCG-UCCg -3' miRNA: 3'- -UCUGGUGCCaGGa--UGCaaCAGCuAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 221347 | 0.67 | 0.994739 |
Target: 5'- gAGACCGCGG-CCU-CGccgcuccgUGUCGGUg- -3' miRNA: 3'- -UCUGGUGCCaGGAuGCa-------ACAGCUAgg -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 218469 | 0.69 | 0.97465 |
Target: 5'- cGGACCGCGGUCaucuccuCGUcccgcggGUCG-UCCg -3' miRNA: 3'- -UCUGGUGCCAGgau----GCAa------CAGCuAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 218231 | 0.67 | 0.994739 |
Target: 5'- cGGGCCGCGGcgCCgauaUAUGUccggGUCGGcgUCCu -3' miRNA: 3'- -UCUGGUGCCa-GG----AUGCAa---CAGCU--AGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 216586 | 0.76 | 0.764884 |
Target: 5'- gAGGCCA-GGcCCUGgG-UGUCGAUCCg -3' miRNA: 3'- -UCUGGUgCCaGGAUgCaACAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 214952 | 0.66 | 0.995453 |
Target: 5'- uGGCCGCGGaCgcACGggGUCcgGAUCCa -3' miRNA: 3'- uCUGGUGCCaGgaUGCaaCAG--CUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 208584 | 0.66 | 0.99794 |
Target: 5'- cGACgCGCagcgGGUCCgggACGagGUCGAgguUCCg -3' miRNA: 3'- uCUG-GUG----CCAGGa--UGCaaCAGCU---AGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 208147 | 0.69 | 0.97711 |
Target: 5'- cAGAUCggaGCGGUCC-GCGcgGUCcGGUCCu -3' miRNA: 3'- -UCUGG---UGCCAGGaUGCaaCAG-CUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 207210 | 0.73 | 0.880511 |
Target: 5'- uGGAagCGCGaGUCCUGCGUggcgaaGUCGAUCg -3' miRNA: 3'- -UCUg-GUGC-CAGGAUGCAa-----CAGCUAGg -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 201865 | 0.67 | 0.994739 |
Target: 5'- gGGGCCuGCGGUCCgaggACGgcGgCGGcuucUCCg -3' miRNA: 3'- -UCUGG-UGCCAGGa---UGCaaCaGCU----AGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 199189 | 0.66 | 0.997565 |
Target: 5'- cGGCCuccaugaGGUCgUACGgguUGUCG-UCCg -3' miRNA: 3'- uCUGGug-----CCAGgAUGCa--ACAGCuAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 195049 | 0.67 | 0.993937 |
Target: 5'- -cGCCGCGGcCCgcggGCGggaggGUCG-UCCg -3' miRNA: 3'- ucUGGUGCCaGGa---UGCaa---CAGCuAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 193248 | 0.68 | 0.988344 |
Target: 5'- cGACgGCGGUUCUACGccUG-CGcgCCc -3' miRNA: 3'- uCUGgUGCCAGGAUGCa-ACaGCuaGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 185256 | 0.75 | 0.783295 |
Target: 5'- cGACCGCGGUCuCUACucgGUCGucgCCa -3' miRNA: 3'- uCUGGUGCCAG-GAUGcaaCAGCua-GG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 184212 | 0.68 | 0.988344 |
Target: 5'- cGGACCGCgGGUUCUcucUGggGUCGA-CCg -3' miRNA: 3'- -UCUGGUG-CCAGGAu--GCaaCAGCUaGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 182691 | 0.69 | 0.981497 |
Target: 5'- gGGGCCGgGcGUCUUccuCGUcuauuagaUGUCGGUCCg -3' miRNA: 3'- -UCUGGUgC-CAGGAu--GCA--------ACAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 173396 | 0.69 | 0.97465 |
Target: 5'- gGGACCGucGUCCUGCGggaccucuccGUCGAUCg -3' miRNA: 3'- -UCUGGUgcCAGGAUGCaa--------CAGCUAGg -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 169092 | 0.66 | 0.997565 |
Target: 5'- cGGCC-CGcGUCCUcguccucgcgggGCGU--UCGGUCCg -3' miRNA: 3'- uCUGGuGC-CAGGA------------UGCAacAGCUAGG- -5' |
|||||||
9385 | 5' | -52.1 | NC_002512.2 | + | 165418 | 0.75 | 0.818472 |
Target: 5'- aGGGCCgGCGGgCCUACGagaucggcGUCGAUCCc -3' miRNA: 3'- -UCUGG-UGCCaGGAUGCaa------CAGCUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home