miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 5' -52.1 NC_002512.2 + 224549 0.67 0.994739
Target:  5'- gGGACCAUGG-CCUuccccaUCGAUCCc -3'
miRNA:   3'- -UCUGGUGCCaGGAugcaacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 221442 0.76 0.755502
Target:  5'- cGGACCGCGG-CCgggGCGcgGUCG-UCCg -3'
miRNA:   3'- -UCUGGUGCCaGGa--UGCaaCAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 221347 0.67 0.994739
Target:  5'- gAGACCGCGG-CCU-CGccgcuccgUGUCGGUg- -3'
miRNA:   3'- -UCUGGUGCCaGGAuGCa-------ACAGCUAgg -5'
9385 5' -52.1 NC_002512.2 + 218469 0.69 0.97465
Target:  5'- cGGACCGCGGUCaucuccuCGUcccgcggGUCG-UCCg -3'
miRNA:   3'- -UCUGGUGCCAGgau----GCAa------CAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 218231 0.67 0.994739
Target:  5'- cGGGCCGCGGcgCCgauaUAUGUccggGUCGGcgUCCu -3'
miRNA:   3'- -UCUGGUGCCa-GG----AUGCAa---CAGCU--AGG- -5'
9385 5' -52.1 NC_002512.2 + 216586 0.76 0.764884
Target:  5'- gAGGCCA-GGcCCUGgG-UGUCGAUCCg -3'
miRNA:   3'- -UCUGGUgCCaGGAUgCaACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 214952 0.66 0.995453
Target:  5'- uGGCCGCGGaCgcACGggGUCcgGAUCCa -3'
miRNA:   3'- uCUGGUGCCaGgaUGCaaCAG--CUAGG- -5'
9385 5' -52.1 NC_002512.2 + 208584 0.66 0.99794
Target:  5'- cGACgCGCagcgGGUCCgggACGagGUCGAgguUCCg -3'
miRNA:   3'- uCUG-GUG----CCAGGa--UGCaaCAGCU---AGG- -5'
9385 5' -52.1 NC_002512.2 + 208147 0.69 0.97711
Target:  5'- cAGAUCggaGCGGUCC-GCGcgGUCcGGUCCu -3'
miRNA:   3'- -UCUGG---UGCCAGGaUGCaaCAG-CUAGG- -5'
9385 5' -52.1 NC_002512.2 + 207210 0.73 0.880511
Target:  5'- uGGAagCGCGaGUCCUGCGUggcgaaGUCGAUCg -3'
miRNA:   3'- -UCUg-GUGC-CAGGAUGCAa-----CAGCUAGg -5'
9385 5' -52.1 NC_002512.2 + 201865 0.67 0.994739
Target:  5'- gGGGCCuGCGGUCCgaggACGgcGgCGGcuucUCCg -3'
miRNA:   3'- -UCUGG-UGCCAGGa---UGCaaCaGCU----AGG- -5'
9385 5' -52.1 NC_002512.2 + 199189 0.66 0.997565
Target:  5'- cGGCCuccaugaGGUCgUACGgguUGUCG-UCCg -3'
miRNA:   3'- uCUGGug-----CCAGgAUGCa--ACAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 195049 0.67 0.993937
Target:  5'- -cGCCGCGGcCCgcggGCGggaggGUCG-UCCg -3'
miRNA:   3'- ucUGGUGCCaGGa---UGCaa---CAGCuAGG- -5'
9385 5' -52.1 NC_002512.2 + 193248 0.68 0.988344
Target:  5'- cGACgGCGGUUCUACGccUG-CGcgCCc -3'
miRNA:   3'- uCUGgUGCCAGGAUGCa-ACaGCuaGG- -5'
9385 5' -52.1 NC_002512.2 + 185256 0.75 0.783295
Target:  5'- cGACCGCGGUCuCUACucgGUCGucgCCa -3'
miRNA:   3'- uCUGGUGCCAG-GAUGcaaCAGCua-GG- -5'
9385 5' -52.1 NC_002512.2 + 184212 0.68 0.988344
Target:  5'- cGGACCGCgGGUUCUcucUGggGUCGA-CCg -3'
miRNA:   3'- -UCUGGUG-CCAGGAu--GCaaCAGCUaGG- -5'
9385 5' -52.1 NC_002512.2 + 182691 0.69 0.981497
Target:  5'- gGGGCCGgGcGUCUUccuCGUcuauuagaUGUCGGUCCg -3'
miRNA:   3'- -UCUGGUgC-CAGGAu--GCA--------ACAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 173396 0.69 0.97465
Target:  5'- gGGACCGucGUCCUGCGggaccucuccGUCGAUCg -3'
miRNA:   3'- -UCUGGUgcCAGGAUGCaa--------CAGCUAGg -5'
9385 5' -52.1 NC_002512.2 + 169092 0.66 0.997565
Target:  5'- cGGCC-CGcGUCCUcguccucgcgggGCGU--UCGGUCCg -3'
miRNA:   3'- uCUGGuGC-CAGGA------------UGCAacAGCUAGG- -5'
9385 5' -52.1 NC_002512.2 + 165418 0.75 0.818472
Target:  5'- aGGGCCgGCGGgCCUACGagaucggcGUCGAUCCc -3'
miRNA:   3'- -UCUGG-UGCCaGGAUGCaa------CAGCUAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.