miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 147167 0.7 0.834571
Target:  5'- --aGUauuaGACGCCGgaacGCGGGCCCGcgccGCGCa -3'
miRNA:   3'- uacCAg---UUGCGGU----UGUCCGGGU----UGCG- -5'
9387 3' -55.1 NC_002512.2 + 110782 0.7 0.834571
Target:  5'- -cGGUacaCGACGCCcacCAGGUCCGcCGCg -3'
miRNA:   3'- uaCCA---GUUGCGGuu-GUCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 203451 0.7 0.842671
Target:  5'- -gGGUCGGCGUCGACAcgcuguacgagcGGUUCGACaGCa -3'
miRNA:   3'- uaCCAGUUGCGGUUGU------------CCGGGUUG-CG- -5'
9387 3' -55.1 NC_002512.2 + 108493 0.7 0.842671
Target:  5'- -cGGUCGucaaGgGCgAGgcCGGGCCCGGCGCc -3'
miRNA:   3'- uaCCAGU----UgCGgUU--GUCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 198164 0.7 0.842671
Target:  5'- -gGGUCGGCGCCGGCcGGCggaCCuccACGUc -3'
miRNA:   3'- uaCCAGUUGCGGUUGuCCG---GGu--UGCG- -5'
9387 3' -55.1 NC_002512.2 + 178865 0.7 0.842671
Target:  5'- cGUGGUCcguCGUCAGCGGGUuguucuCCAcgaACGCg -3'
miRNA:   3'- -UACCAGuu-GCGGUUGUCCG------GGU---UGCG- -5'
9387 3' -55.1 NC_002512.2 + 169620 0.7 0.850583
Target:  5'- -aGGUCG--GCCGGCAGGUCCAGgugucgggucUGCg -3'
miRNA:   3'- uaCCAGUugCGGUUGUCCGGGUU----------GCG- -5'
9387 3' -55.1 NC_002512.2 + 132728 0.7 0.850583
Target:  5'- -cGGcCcgUGCC-GCAGGCgCAGCGCg -3'
miRNA:   3'- uaCCaGuuGCGGuUGUCCGgGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 119588 0.69 0.858301
Target:  5'- -gGGUCcccucGCGCCAGCAGugucGCCCu-CGCc -3'
miRNA:   3'- uaCCAGu----UGCGGUUGUC----CGGGuuGCG- -5'
9387 3' -55.1 NC_002512.2 + 126571 0.69 0.858301
Target:  5'- -cGGUCGuccuggcgaACGCCcggaucuggGACAGGuCCCGGCGg -3'
miRNA:   3'- uaCCAGU---------UGCGG---------UUGUCC-GGGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 103573 0.69 0.86582
Target:  5'- cGUGGggagaCGACGCCucGCAGGCCacgAGgGCg -3'
miRNA:   3'- -UACCa----GUUGCGGu-UGUCCGGg--UUgCG- -5'
9387 3' -55.1 NC_002512.2 + 98839 0.69 0.86582
Target:  5'- -cGGcgCGGCGCCGuccucccccGCGGcCCCGACGCc -3'
miRNA:   3'- uaCCa-GUUGCGGU---------UGUCcGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 129962 0.69 0.87241
Target:  5'- --aGcCGACGCCGcccuucgGCGGGCCCccGGCGCc -3'
miRNA:   3'- uacCaGUUGCGGU-------UGUCCGGG--UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 74698 0.69 0.873132
Target:  5'- -cGGUCGGaucuCGCaGACGGGCUuCGGCGCg -3'
miRNA:   3'- uaCCAGUU----GCGgUUGUCCGG-GUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 185475 0.69 0.873132
Target:  5'- cGUGGUCcugcCGCC-GCAGGUCaUGGCGCa -3'
miRNA:   3'- -UACCAGuu--GCGGuUGUCCGG-GUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 196390 0.69 0.873132
Target:  5'- -cGG--GACGCC-GCGGGUCUGGCGCg -3'
miRNA:   3'- uaCCagUUGCGGuUGUCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 100593 0.69 0.873132
Target:  5'- gGUGGggaaaCcGCGCCcGC-GGCUCGACGCa -3'
miRNA:   3'- -UACCa----GuUGCGGuUGuCCGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 225221 0.69 0.880234
Target:  5'- cUGGgcuUCGacGCGCCGGCGGGgCCucCGCu -3'
miRNA:   3'- uACC---AGU--UGCGGUUGUCCgGGuuGCG- -5'
9387 3' -55.1 NC_002512.2 + 112155 0.69 0.880234
Target:  5'- -cGGUCGACggcgaGCCGGCGcucGaGCCCGcACGCg -3'
miRNA:   3'- uaCCAGUUG-----CGGUUGU---C-CGGGU-UGCG- -5'
9387 3' -55.1 NC_002512.2 + 91895 0.69 0.887119
Target:  5'- -cGGcgCGGCGCaCGGCccgcucGGGCCCGgcACGCa -3'
miRNA:   3'- uaCCa-GUUGCG-GUUG------UCCGGGU--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.