Results 1 - 20 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 205645 | 0.84 | 0.199273 |
Target: 5'- -cGGggGACGCCGucgGCGGGCCCGACGCc -3' miRNA: 3'- uaCCagUUGCGGU---UGUCCGGGUUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 94540 | 0.82 | 0.236197 |
Target: 5'- -cGGUCGACgGCCAGCAGcacCCCGGCGCg -3' miRNA: 3'- uaCCAGUUG-CGGUUGUCc--GGGUUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 171616 | 0.81 | 0.278688 |
Target: 5'- -aGGUCGuCGCCuuCGGGCCCGACaGCg -3' miRNA: 3'- uaCCAGUuGCGGuuGUCCGGGUUG-CG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 177120 | 0.81 | 0.291898 |
Target: 5'- -aGGUCcggguGCGCCAGCAGGgCCcGCGCg -3' miRNA: 3'- uaCCAGu----UGCGGUUGUCCgGGuUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 185207 | 0.79 | 0.373236 |
Target: 5'- -cGGUCGACGCCGcGguGGCCCGcgucguggaACGCg -3' miRNA: 3'- uaCCAGUUGCGGU-UguCCGGGU---------UGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 99629 | 0.77 | 0.450352 |
Target: 5'- -cGGUCGuCGCCcucggaGGGCCCGGCGCc -3' miRNA: 3'- uaCCAGUuGCGGuug---UCCGGGUUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 114172 | 0.76 | 0.515971 |
Target: 5'- -cGGUCcuccucgguGGCGCCGGCgucGGGCCCGGCGg -3' miRNA: 3'- uaCCAG---------UUGCGGUUG---UCCGGGUUGCg -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 208282 | 0.75 | 0.544285 |
Target: 5'- cAUGGUCAACGCCGAgGGGCgcuuucCCGucugcgacaugaaGCGCc -3' miRNA: 3'- -UACCAGUUGCGGUUgUCCG------GGU-------------UGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 204711 | 0.75 | 0.545271 |
Target: 5'- --cGUCGGCGaCGGCGGGCCCGGgGCg -3' miRNA: 3'- uacCAGUUGCgGUUGUCCGGGUUgCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 98757 | 0.74 | 0.645726 |
Target: 5'- -gGGUUgacgaagacgGGCGCCGagaaGguGGCCCGGCGCa -3' miRNA: 3'- uaCCAG----------UUGCGGU----UguCCGGGUUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 203560 | 0.74 | 0.595173 |
Target: 5'- -cGcGUCccuCGCCAccgACAGGCCCAGCGa -3' miRNA: 3'- uaC-CAGuu-GCGGU---UGUCCGGGUUGCg -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 102915 | 0.73 | 0.665927 |
Target: 5'- -cGGUCGACgGCC-ACGGGCCCcagguCGUa -3' miRNA: 3'- uaCCAGUUG-CGGuUGUCCGGGuu---GCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 90277 | 0.73 | 0.665927 |
Target: 5'- gAUGGUCcugaccuGCGCgGAcCGGGCCCGauugaGCGCg -3' miRNA: 3'- -UACCAGu------UGCGgUU-GUCCGGGU-----UGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 157136 | 0.73 | 0.675991 |
Target: 5'- -gGGUCGGCG---GCGGGCCCGGgGCg -3' miRNA: 3'- uaCCAGUUGCgguUGUCCGGGUUgCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 122106 | 0.73 | 0.665927 |
Target: 5'- -aGGUCGGCGCUGACGucGGCC--GCGCu -3' miRNA: 3'- uaCCAGUUGCGGUUGU--CCGGguUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 149162 | 0.73 | 0.665927 |
Target: 5'- -gGGcCggUGCCGcccGCGGGCCC-GCGCg -3' miRNA: 3'- uaCCaGuuGCGGU---UGUCCGGGuUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 121148 | 0.72 | 0.735338 |
Target: 5'- -cGGccgaGACGCCGGCcgcGGCCCAGgGCg -3' miRNA: 3'- uaCCag--UUGCGGUUGu--CCGGGUUgCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 157082 | 0.72 | 0.735338 |
Target: 5'- -gGGUCGccgGCGCCcacGGCGGGCCCGucccggcgACGUc -3' miRNA: 3'- uaCCAGU---UGCGG---UUGUCCGGGU--------UGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 224823 | 0.72 | 0.715812 |
Target: 5'- ----cCAACGCCGcggGCGGGCUgGACGCg -3' miRNA: 3'- uaccaGUUGCGGU---UGUCCGGgUUGCG- -5' |
|||||||
9387 | 3' | -55.1 | NC_002512.2 | + | 208579 | 0.72 | 0.715812 |
Target: 5'- -cGaGUCGACGCgCAGCGGGUCCGggACGa -3' miRNA: 3'- uaC-CAGUUGCG-GUUGUCCGGGU--UGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home