miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9388 5' -52.9 NC_002512.2 + 145882 0.66 0.994625
Target:  5'- cGUCGGc--GACCugGACCUgaAGCUG-CGCg -3'
miRNA:   3'- -CAGCCuaaCUGG--CUGGG--UUGACuGCG- -5'
9388 5' -52.9 NC_002512.2 + 190535 0.66 0.994625
Target:  5'- gGUCGGGgcgaggGACCGGCU--GCUGG-GCa -3'
miRNA:   3'- -CAGCCUaa----CUGGCUGGguUGACUgCG- -5'
9388 5' -52.9 NC_002512.2 + 213392 0.66 0.994625
Target:  5'- cGUCGGu----CCGGCCCccGCUG-CGCc -3'
miRNA:   3'- -CAGCCuaacuGGCUGGGu-UGACuGCG- -5'
9388 5' -52.9 NC_002512.2 + 221242 0.66 0.993809
Target:  5'- gGUC-GAUcGGCCGGCCgCGGCggaagucggggGACGCg -3'
miRNA:   3'- -CAGcCUAaCUGGCUGG-GUUGa----------CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 82124 0.66 0.993809
Target:  5'- aGUCGGGa----CGGCCgcGCUGGCGCa -3'
miRNA:   3'- -CAGCCUaacugGCUGGguUGACUGCG- -5'
9388 5' -52.9 NC_002512.2 + 224109 0.66 0.991879
Target:  5'- uGUCGGucguggUGACCaucucggccgugGACCCGcgccgggagGCgGACGCg -3'
miRNA:   3'- -CAGCCua----ACUGG------------CUGGGU---------UGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 105135 0.66 0.991879
Target:  5'- cGUCGuc---GCCGcACCCGACgGACGCc -3'
miRNA:   3'- -CAGCcuaacUGGC-UGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 151232 0.66 0.991879
Target:  5'- -cCGGc---GCCGGCUCGACcGACGCc -3'
miRNA:   3'- caGCCuaacUGGCUGGGUUGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 188410 0.66 0.99075
Target:  5'- -cCGGAUcaUGACCGACCacgaGACcGuCGUc -3'
miRNA:   3'- caGCCUA--ACUGGCUGGg---UUGaCuGCG- -5'
9388 5' -52.9 NC_002512.2 + 225565 0.66 0.99075
Target:  5'- uUCGGcgacgaGGCCGACCuCGAggGGCGCc -3'
miRNA:   3'- cAGCCuaa---CUGGCUGG-GUUgaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 191532 0.67 0.9895
Target:  5'- cGUgGGGUcGGgCGACCCGGCgGAucccCGCg -3'
miRNA:   3'- -CAgCCUAaCUgGCUGGGUUGaCU----GCG- -5'
9388 5' -52.9 NC_002512.2 + 126523 0.67 0.9895
Target:  5'- gGUCGGAcgacccGACCGcgGCCCcgGACUcgucGACGCc -3'
miRNA:   3'- -CAGCCUaa----CUGGC--UGGG--UUGA----CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 207435 0.67 0.988123
Target:  5'- -aCGGAgaucUGGCCGuaguaGCCCAGCgGAUGg -3'
miRNA:   3'- caGCCUa---ACUGGC-----UGGGUUGaCUGCg -5'
9388 5' -52.9 NC_002512.2 + 210444 0.67 0.988123
Target:  5'- cGUCGGg--GACUgGACCCGug-GAUGCg -3'
miRNA:   3'- -CAGCCuaaCUGG-CUGGGUugaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 224376 0.67 0.986611
Target:  5'- cUCGGuccggGACCucgcGAcCCCGGCgcgGACGCg -3'
miRNA:   3'- cAGCCuaa--CUGG----CU-GGGUUGa--CUGCG- -5'
9388 5' -52.9 NC_002512.2 + 204577 0.67 0.984954
Target:  5'- -cCGGug-GGgCGACCCGACUGGgGa -3'
miRNA:   3'- caGCCuaaCUgGCUGGGUUGACUgCg -5'
9388 5' -52.9 NC_002512.2 + 219332 0.67 0.984954
Target:  5'- cGUCGGcgUGGCCcgccggcuGCCCGGCgucCGCg -3'
miRNA:   3'- -CAGCCuaACUGGc-------UGGGUUGacuGCG- -5'
9388 5' -52.9 NC_002512.2 + 192843 0.67 0.984954
Target:  5'- -aCGaGGUUGACggagCGACCCGAgUGACa- -3'
miRNA:   3'- caGC-CUAACUG----GCUGGGUUgACUGcg -5'
9388 5' -52.9 NC_002512.2 + 200645 0.67 0.984954
Target:  5'- cGUCGGAggacgGACugcgCGACCCGcgGCcGGCGUu -3'
miRNA:   3'- -CAGCCUaa---CUG----GCUGGGU--UGaCUGCG- -5'
9388 5' -52.9 NC_002512.2 + 165569 0.67 0.983145
Target:  5'- gGUCGGcgacguggUGGCCGGgcagccgcucCCCAACUGGCc- -3'
miRNA:   3'- -CAGCCua------ACUGGCU----------GGGUUGACUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.