miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9430 3' -63.1 NC_002531.1 + 125097 0.66 0.553062
Target:  5'- uGGGCAGCagguaCAGagacauguuUGCAguCUCAGGGGCUg -3'
miRNA:   3'- -CCCGUCGg----GUC---------GCGU--GGGUCCCUGAg -5'
9430 3' -63.1 NC_002531.1 + 121934 0.66 0.543357
Target:  5'- uGGGCguuaguaaaGGCCCAGaa----CAGGGACUCg -3'
miRNA:   3'- -CCCG---------UCGGGUCgcguggGUCCCUGAG- -5'
9430 3' -63.1 NC_002531.1 + 104762 0.66 0.543357
Target:  5'- uGGUGGCUgagAGCGCACCuCAGGGccaAUUCu -3'
miRNA:   3'- cCCGUCGGg--UCGCGUGG-GUCCC---UGAG- -5'
9430 3' -63.1 NC_002531.1 + 57299 0.66 0.533709
Target:  5'- -aGCA-UCCAGgGCAUUCAGGcGACUCa -3'
miRNA:   3'- ccCGUcGGGUCgCGUGGGUCC-CUGAG- -5'
9430 3' -63.1 NC_002531.1 + 47898 0.66 0.52126
Target:  5'- aGGUAGCCCGGCcauguaccaCACCCGcaacacuuuuaacuGGGACa- -3'
miRNA:   3'- cCCGUCGGGUCGc--------GUGGGU--------------CCCUGag -5'
9430 3' -63.1 NC_002531.1 + 80680 0.67 0.486487
Target:  5'- uGGGCcGCuCCGGCcugGCAgCCAaGGGcCUCa -3'
miRNA:   3'- -CCCGuCG-GGUCG---CGUgGGU-CCCuGAG- -5'
9430 3' -63.1 NC_002531.1 + 54406 0.68 0.432595
Target:  5'- aGGGCGGUUCGGCGCGCCUGccgguuagcGGGugguacACUUc -3'
miRNA:   3'- -CCCGUCGGGUCGCGUGGGU---------CCC------UGAG- -5'
9430 3' -63.1 NC_002531.1 + 80679 0.68 0.406148
Target:  5'- aGGGgGGCUCAGUacGCuaggGCCCGucaaaauGGGGCUCa -3'
miRNA:   3'- -CCCgUCGGGUCG--CG----UGGGU-------CCCUGAG- -5'
9430 3' -63.1 NC_002531.1 + 114292 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114524 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114495 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114379 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114350 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114321 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114234 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114205 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114147 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114118 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114060 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 114031 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.