miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9430 3' -63.1 NC_002531.1 + 130178 0.7 0.314608
Target:  5'- gGGGCGGCCgGGgGaggUCCGGGGGCa- -3'
miRNA:   3'- -CCCGUCGGgUCgCgu-GGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 125097 0.66 0.553062
Target:  5'- uGGGCAGCagguaCAGagacauguuUGCAguCUCAGGGGCUg -3'
miRNA:   3'- -CCCGUCGg----GUC---------GCGU--GGGUCCCUGAg -5'
9430 3' -63.1 NC_002531.1 + 121934 0.66 0.543357
Target:  5'- uGGGCguuaguaaaGGCCCAGaa----CAGGGACUCg -3'
miRNA:   3'- -CCCG---------UCGGGUCgcguggGUCCCUGAG- -5'
9430 3' -63.1 NC_002531.1 + 118419 0.71 0.256343
Target:  5'- gGGGCcugaaggagauAGCCCAGaUGgG-CCAGGGGCUCa -3'
miRNA:   3'- -CCCG-----------UCGGGUC-GCgUgGGUCCCUGAG- -5'
9430 3' -63.1 NC_002531.1 + 115683 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115654 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115625 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115596 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115567 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115538 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115509 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115480 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115451 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115422 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115393 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115364 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115335 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115306 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115277 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5'
9430 3' -63.1 NC_002531.1 + 115248 0.68 0.398662
Target:  5'- gGGGCcaCCUAGCcaGCcaGCCCGGGGACg- -3'
miRNA:   3'- -CCCGucGGGUCG--CG--UGGGUCCCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.