miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9442 3' -56.3 NC_002531.1 + 84808 0.66 0.871546
Target:  5'- aGACCACaGCCuuacucUGCCcgaagGACaGCGCCgCCa -3'
miRNA:   3'- -CUGGUG-CGGu-----ACGG-----UUGaUGUGGgGG- -5'
9442 3' -56.3 NC_002531.1 + 103133 0.66 0.871546
Target:  5'- cACCACGCCcu-CCAuu--CAUCCCCa -3'
miRNA:   3'- cUGGUGCGGuacGGUugauGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 121442 0.66 0.871546
Target:  5'- cACCugGCCAcGCUGAU-AgACCCCa -3'
miRNA:   3'- cUGGugCGGUaCGGUUGaUgUGGGGg -5'
9442 3' -56.3 NC_002531.1 + 37534 0.66 0.871546
Target:  5'- aACC-UGCCccaGCCAucccCUcaGCACCCCCa -3'
miRNA:   3'- cUGGuGCGGua-CGGUu---GA--UGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 80690 0.66 0.864027
Target:  5'- cGGCCugGCa--GCCAaggGCcucagcauCACCCCCu -3'
miRNA:   3'- -CUGGugCGguaCGGU---UGau------GUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 129619 0.66 0.864027
Target:  5'- gGACCAUcaagauuuugGUCAUGCCAugUu--CUCCCa -3'
miRNA:   3'- -CUGGUG----------CGGUACGGUugAuguGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 13054 0.66 0.859414
Target:  5'- -cCCACGUCAU-CCAguacaACUGCaacacuuacuggcaaGCCCCCu -3'
miRNA:   3'- cuGGUGCGGUAcGGU-----UGAUG---------------UGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 122434 0.66 0.848357
Target:  5'- cGCCACGCag-GCCAcg-AgGCCUCCg -3'
miRNA:   3'- cUGGUGCGguaCGGUugaUgUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 17756 0.66 0.848357
Target:  5'- cAUCACaGCCu--CCuuUUACACCCCCa -3'
miRNA:   3'- cUGGUG-CGGuacGGuuGAUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 86460 0.66 0.848357
Target:  5'- -uCCugGCCAuggcUGCUGGgUGCAUCgCCCu -3'
miRNA:   3'- cuGGugCGGU----ACGGUUgAUGUGG-GGG- -5'
9442 3' -56.3 NC_002531.1 + 46156 0.66 0.843497
Target:  5'- aGCUGCGCCAcGCCccuccucuguuuauACUACAgUCCCu -3'
miRNA:   3'- cUGGUGCGGUaCGGu-------------UGAUGUgGGGG- -5'
9442 3' -56.3 NC_002531.1 + 34429 0.66 0.840217
Target:  5'- aGACa--GCUGUGCCGcaACUguuGCACCuCCCg -3'
miRNA:   3'- -CUGgugCGGUACGGU--UGA---UGUGG-GGG- -5'
9442 3' -56.3 NC_002531.1 + 8831 0.66 0.840217
Target:  5'- aACCugGCUcgGCCAuACUucgugucaACCUCCa -3'
miRNA:   3'- cUGGugCGGuaCGGU-UGAug------UGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 102607 0.67 0.831885
Target:  5'- gGACCGC-CCAgagagGCCuaaagaUGgGCCCCCu -3'
miRNA:   3'- -CUGGUGcGGUa----CGGuug---AUgUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 10136 0.67 0.831885
Target:  5'- cACCugGCCuUGCUc-UUugACCCCUg -3'
miRNA:   3'- cUGGugCGGuACGGuuGAugUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 129383 0.67 0.831885
Target:  5'- aGCCA--CCAUGCC--CUACACCCUUa -3'
miRNA:   3'- cUGGUgcGGUACGGuuGAUGUGGGGG- -5'
9442 3' -56.3 NC_002531.1 + 20377 0.67 0.814673
Target:  5'- aGGCCugGCCA-GUgGACUGguacaggugUACCaCCCa -3'
miRNA:   3'- -CUGGugCGGUaCGgUUGAU---------GUGG-GGG- -5'
9442 3' -56.3 NC_002531.1 + 89584 0.67 0.805808
Target:  5'- aGCCGCGCCcuaGCUAGCUGCuuCUCg -3'
miRNA:   3'- cUGGUGCGGua-CGGUUGAUGugGGGg -5'
9442 3' -56.3 NC_002531.1 + 107468 0.67 0.805808
Target:  5'- uACCACacagggcCCAUGCCuGCU-CAgCCCCg -3'
miRNA:   3'- cUGGUGc------GGUACGGuUGAuGUgGGGG- -5'
9442 3' -56.3 NC_002531.1 + 52168 0.67 0.805808
Target:  5'- aGACUcCGCaguggcaauUGCCAACUuuauugacgaguGCGCCCCUa -3'
miRNA:   3'- -CUGGuGCGgu-------ACGGUUGA------------UGUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.