Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9445 | 3' | -56.2 | NC_002531.1 | + | 61634 | 0.66 | 0.857501 |
Target: 5'- uGGAUuuuACUuUGGgGUGuUGGUGGCUUCCa -3' miRNA: 3'- -UCUG---UGAcACCgUAU-ACCACCGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114530 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114269 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114298 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114327 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114356 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114385 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114414 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114472 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114443 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114240 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114211 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114559 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114588 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114617 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114501 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 62764 | 0.67 | 0.82457 |
Target: 5'- cGACACUGUGGaaAUAUGGaaGCCgUCu -3' miRNA: 3'- uCUGUGACACCg-UAUACCacCGGgGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 103967 | 0.67 | 0.82457 |
Target: 5'- aGGAgGaaGcGGCAgcgGUGGaagugGGCCCCCu -3' miRNA: 3'- -UCUgUgaCaCCGUa--UACCa----CCGGGGG- -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114153 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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9445 | 3' | -56.2 | NC_002531.1 | + | 114182 | 0.67 | 0.82457 |
Target: 5'- ---gGCUGgcUGGCua--GGUGGCCCCg -3' miRNA: 3'- ucugUGAC--ACCGuauaCCACCGGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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