Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9450 | 5' | -50.5 | NC_002531.1 | + | 114751 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114462 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114491 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114520 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114549 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114578 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114607 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114636 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114693 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114433 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114404 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114375 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114172 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114201 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114230 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114259 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114288 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114317 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114346 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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9450 | 5' | -50.5 | NC_002531.1 | + | 114722 | 0.66 | 0.983322 |
Target: 5'- ---------cUAGGUGGccccguccccGGGCUGGCUg -3' miRNA: 3'- aauuaaauacAUCCACC----------CCCGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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