miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9451 5' -52.7 NC_002531.1 + 116753 1.11 0.003519
Target:  5'- cCCCAAAGCGGCCGCCAAAACACCAUCc -3'
miRNA:   3'- -GGGUUUCGCCGGCGGUUUUGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 12226 0.8 0.319396
Target:  5'- aCCCAGcuCGGCCGCCAcagcgucuauCACCAUCa -3'
miRNA:   3'- -GGGUUucGCCGGCGGUuuu-------GUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 9900 0.79 0.368758
Target:  5'- aCCAAAGCGGUCGCCuuuAGAgACC-UCa -3'
miRNA:   3'- gGGUUUCGCCGGCGGu--UUUgUGGuAG- -5'
9451 5' -52.7 NC_002531.1 + 69626 0.73 0.664581
Target:  5'- aCCGGAGCGacucuucuaGCCGUgAGAGCACCAc- -3'
miRNA:   3'- gGGUUUCGC---------CGGCGgUUUUGUGGUag -5'
9451 5' -52.7 NC_002531.1 + 58122 0.73 0.696095
Target:  5'- uUCCAAAGCGGuCCcCCAcGGACACCGc- -3'
miRNA:   3'- -GGGUUUCGCC-GGcGGU-UUUGUGGUag -5'
9451 5' -52.7 NC_002531.1 + 124125 0.72 0.727092
Target:  5'- gCCCuuauguuAGUGGCUGCUu--GCACCAUUa -3'
miRNA:   3'- -GGGuu-----UCGCCGGCGGuuuUGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 34823 0.72 0.746331
Target:  5'- gCCAGgcAGCGGguaucucaCCGCCAcauauuuaaaggcGAGCGCCGUCc -3'
miRNA:   3'- gGGUU--UCGCC--------GGCGGU-------------UUUGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 91366 0.71 0.79586
Target:  5'- aCCAAcuCGGCCcUCAAAAuCACCAUCu -3'
miRNA:   3'- gGGUUucGCCGGcGGUUUU-GUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 122668 0.71 0.805129
Target:  5'- cCCUAAAaUGGCCGCCcuguuCGCUAUCa -3'
miRNA:   3'- -GGGUUUcGCCGGCGGuuuu-GUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 102721 0.7 0.81423
Target:  5'- uCUCAGGGCGGCUGaCCAAAaaagcguuuuuACGCCu-- -3'
miRNA:   3'- -GGGUUUCGCCGGC-GGUUU-----------UGUGGuag -5'
9451 5' -52.7 NC_002531.1 + 96959 0.7 0.823153
Target:  5'- aCCGugAGGCGGUgGCCcuguACACCAUa -3'
miRNA:   3'- gGGU--UUCGCCGgCGGuuu-UGUGGUAg -5'
9451 5' -52.7 NC_002531.1 + 105429 0.7 0.840431
Target:  5'- aUCAGuuUGGCCGCCAGGAUAgCCAUg -3'
miRNA:   3'- gGGUUucGCCGGCGGUUUUGU-GGUAg -5'
9451 5' -52.7 NC_002531.1 + 68058 0.7 0.84877
Target:  5'- cCCUGGAGUGGCUGgCGcgcAACACCuAUCg -3'
miRNA:   3'- -GGGUUUCGCCGGCgGUu--UUGUGG-UAG- -5'
9451 5' -52.7 NC_002531.1 + 120120 0.69 0.877733
Target:  5'- gCCAGGGCGaG-UGCCcaguccugaucuuaGAAGCACCAUCu -3'
miRNA:   3'- gGGUUUCGC-CgGCGG--------------UUUUGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 84826 0.69 0.88645
Target:  5'- gCCCGAAGgacaGcGCCGCCAaaccacaGAGCACCc-- -3'
miRNA:   3'- -GGGUUUCg---C-CGGCGGU-------UUUGUGGuag -5'
9451 5' -52.7 NC_002531.1 + 35981 0.69 0.887161
Target:  5'- cCCCAaaaAAGCaGGCagaaaGCCGc--CACCAUCa -3'
miRNA:   3'- -GGGU---UUCG-CCGg----CGGUuuuGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 95461 0.69 0.894135
Target:  5'- cCCCAGAGCccuCCGCCAAcuGAC-CCAg- -3'
miRNA:   3'- -GGGUUUCGcc-GGCGGUU--UUGuGGUag -5'
9451 5' -52.7 NC_002531.1 + 83045 0.69 0.894135
Target:  5'- gUCCGugaUGGCCGCCAGGu--CCAUCa -3'
miRNA:   3'- -GGGUuucGCCGGCGGUUUuguGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 104006 0.68 0.907343
Target:  5'- cCCCGGGGCaGGCCcUCAAAauGCACCu-- -3'
miRNA:   3'- -GGGUUUCG-CCGGcGGUUU--UGUGGuag -5'
9451 5' -52.7 NC_002531.1 + 71244 0.67 0.935921
Target:  5'- --aAAGGCGGCUGuCCAAggUACCu-- -3'
miRNA:   3'- gggUUUCGCCGGC-GGUUuuGUGGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.