Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9451 | 5' | -52.7 | NC_002531.1 | + | 9900 | 0.79 | 0.368758 |
Target: 5'- aCCAAAGCGGUCGCCuuuAGAgACC-UCa -3' miRNA: 3'- gGGUUUCGCCGGCGGu--UUUgUGGuAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 12226 | 0.8 | 0.319396 |
Target: 5'- aCCCAGcuCGGCCGCCAcagcgucuauCACCAUCa -3' miRNA: 3'- -GGGUUucGCCGGCGGUuuu-------GUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 34248 | 0.67 | 0.935921 |
Target: 5'- cUCCA---CGGCCauacccccgGCCAGAGCACCAc- -3' miRNA: 3'- -GGGUuucGCCGG---------CGGUUUUGUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 34823 | 0.72 | 0.746331 |
Target: 5'- gCCAGgcAGCGGguaucucaCCGCCAcauauuuaaaggcGAGCGCCGUCc -3' miRNA: 3'- gGGUU--UCGCC--------GGCGGU-------------UUUGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 35981 | 0.69 | 0.887161 |
Target: 5'- cCCCAaaaAAGCaGGCagaaaGCCGc--CACCAUCa -3' miRNA: 3'- -GGGU---UUCG-CCGg----CGGUuuuGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 36162 | 0.66 | 0.954198 |
Target: 5'- gCCCcc-GUGGCCGgCAAcg-GCCAUCa -3' miRNA: 3'- -GGGuuuCGCCGGCgGUUuugUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 36226 | 0.67 | 0.935921 |
Target: 5'- uUCAGuGUGGCCGCCAGu---CCAUUc -3' miRNA: 3'- gGGUUuCGCCGGCGGUUuuguGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 44009 | 0.66 | 0.961857 |
Target: 5'- uCCCu--GCGGCCGCUgc-GgACCAa- -3' miRNA: 3'- -GGGuuuCGCCGGCGGuuuUgUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 44512 | 0.66 | 0.965332 |
Target: 5'- uUCAAAGuUGGCCaCCAGAGCACgGg- -3' miRNA: 3'- gGGUUUC-GCCGGcGGUUUUGUGgUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 48893 | 0.67 | 0.945562 |
Target: 5'- cCCCGGcucAGUGGCCuCCAu--CACCAc- -3' miRNA: 3'- -GGGUU---UCGCCGGcGGUuuuGUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 58122 | 0.73 | 0.696095 |
Target: 5'- uUCCAAAGCGGuCCcCCAcGGACACCGc- -3' miRNA: 3'- -GGGUUUCGCC-GGcGGU-UUUGUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 68058 | 0.7 | 0.84877 |
Target: 5'- cCCUGGAGUGGCUGgCGcgcAACACCuAUCg -3' miRNA: 3'- -GGGUUUCGCCGGCgGUu--UUGUGG-UAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 68713 | 0.67 | 0.945562 |
Target: 5'- gCCCAucAGCgGGCUGCUGGAcuACGCC-UCc -3' miRNA: 3'- -GGGUu-UCG-CCGGCGGUUU--UGUGGuAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 69626 | 0.73 | 0.664581 |
Target: 5'- aCCGGAGCGacucuucuaGCCGUgAGAGCACCAc- -3' miRNA: 3'- gGGUUUCGC---------CGGCGgUUUUGUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 71244 | 0.67 | 0.935921 |
Target: 5'- --aAAGGCGGCUGuCCAAggUACCu-- -3' miRNA: 3'- gggUUUCGCCGGC-GGUUuuGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 82986 | 0.67 | 0.935921 |
Target: 5'- aCCGGAGCGaGCUGUCucacAGGCACUAc- -3' miRNA: 3'- gGGUUUCGC-CGGCGGu---UUUGUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 83045 | 0.69 | 0.894135 |
Target: 5'- gUCCGugaUGGCCGCCAGGu--CCAUCa -3' miRNA: 3'- -GGGUuucGCCGGCGGUUUuguGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 83074 | 0.67 | 0.935921 |
Target: 5'- aCCCgAGAGCuucugccuGGgUGcCCAAGACACCAUg -3' miRNA: 3'- -GGG-UUUCG--------CCgGC-GGUUUUGUGGUAg -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 84826 | 0.69 | 0.88645 |
Target: 5'- gCCCGAAGgacaGcGCCGCCAaaccacaGAGCACCc-- -3' miRNA: 3'- -GGGUUUCg---C-CGGCGGU-------UUUGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 91366 | 0.71 | 0.79586 |
Target: 5'- aCCAAcuCGGCCcUCAAAAuCACCAUCu -3' miRNA: 3'- gGGUUucGCCGGcGGUUUU-GUGGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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