Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9451 | 5' | -52.7 | NC_002531.1 | + | 121812 | 0.66 | 0.969814 |
Target: 5'- cCCCAAcAGCcGCCaCCAGAggcucuguauaucccACGCCAUUg -3' miRNA: 3'- -GGGUU-UCGcCGGcGGUUU---------------UGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 82986 | 0.67 | 0.935921 |
Target: 5'- aCCGGAGCGaGCUGUCucacAGGCACUAc- -3' miRNA: 3'- gGGUUUCGC-CGGCGGu---UUUGUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 68713 | 0.67 | 0.945562 |
Target: 5'- gCCCAucAGCgGGCUGCUGGAcuACGCC-UCc -3' miRNA: 3'- -GGGUu-UCG-CCGGCGGUUU--UGUGGuAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 122182 | 0.67 | 0.945562 |
Target: 5'- gCUAGacAGgGGCUGCUGAAAgACUAUCu -3' miRNA: 3'- gGGUU--UCgCCGGCGGUUUUgUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 48893 | 0.67 | 0.945562 |
Target: 5'- cCCCGGcucAGUGGCCuCCAu--CACCAc- -3' miRNA: 3'- -GGGUU---UCGCCGGcGGUuuuGUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 44009 | 0.66 | 0.961857 |
Target: 5'- uCCCu--GCGGCCGCUgc-GgACCAa- -3' miRNA: 3'- -GGGuuuCGCCGGCGGuuuUgUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 113309 | 0.66 | 0.961857 |
Target: 5'- gCUGGuGCGGCUGCCAcucaaacAGCACCcaAUCg -3' miRNA: 3'- gGGUUuCGCCGGCGGUu------UUGUGG--UAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 44512 | 0.66 | 0.965332 |
Target: 5'- uUCAAAGuUGGCCaCCAGAGCACgGg- -3' miRNA: 3'- gGGUUUC-GCCGGcGGUUUUGUGgUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 120495 | 0.66 | 0.968578 |
Target: 5'- gCCCAAAGCcauauauuauGuGCUGUCGGAGCGCUg-- -3' miRNA: 3'- -GGGUUUCG----------C-CGGCGGUUUUGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 71244 | 0.67 | 0.935921 |
Target: 5'- --aAAGGCGGCUGuCCAAggUACCu-- -3' miRNA: 3'- gggUUUCGCCGGC-GGUUuuGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 36226 | 0.67 | 0.935921 |
Target: 5'- uUCAGuGUGGCCGCCAGu---CCAUUc -3' miRNA: 3'- gGGUUuCGCCGGCGGUUuuguGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 83074 | 0.67 | 0.935921 |
Target: 5'- aCCCgAGAGCuucugccuGGgUGcCCAAGACACCAUg -3' miRNA: 3'- -GGG-UUUCG--------CCgGC-GGUUUUGUGGUAg -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 124125 | 0.72 | 0.727092 |
Target: 5'- gCCCuuauguuAGUGGCUGCUu--GCACCAUUa -3' miRNA: 3'- -GGGuu-----UCGCCGGCGGuuuUGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 102721 | 0.7 | 0.81423 |
Target: 5'- uCUCAGGGCGGCUGaCCAAAaaagcguuuuuACGCCu-- -3' miRNA: 3'- -GGGUUUCGCCGGC-GGUUU-----------UGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 96959 | 0.7 | 0.823153 |
Target: 5'- aCCGugAGGCGGUgGCCcuguACACCAUa -3' miRNA: 3'- gGGU--UUCGCCGgCGGuuu-UGUGGUAg -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 105429 | 0.7 | 0.840431 |
Target: 5'- aUCAGuuUGGCCGCCAGGAUAgCCAUg -3' miRNA: 3'- gGGUUucGCCGGCGGUUUUGU-GGUAg -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 68058 | 0.7 | 0.84877 |
Target: 5'- cCCUGGAGUGGCUGgCGcgcAACACCuAUCg -3' miRNA: 3'- -GGGUUUCGCCGGCgGUu--UUGUGG-UAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 120120 | 0.69 | 0.877733 |
Target: 5'- gCCAGGGCGaG-UGCCcaguccugaucuuaGAAGCACCAUCu -3' miRNA: 3'- gGGUUUCGC-CgGCGG--------------UUUUGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 84826 | 0.69 | 0.88645 |
Target: 5'- gCCCGAAGgacaGcGCCGCCAaaccacaGAGCACCc-- -3' miRNA: 3'- -GGGUUUCg---C-CGGCGGU-------UUUGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 95461 | 0.69 | 0.894135 |
Target: 5'- cCCCAGAGCccuCCGCCAAcuGAC-CCAg- -3' miRNA: 3'- -GGGUUUCGcc-GGCGGUU--UUGuGGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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