miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9452 5' -56.2 NC_002531.1 + 118084 0.66 0.859814
Target:  5'- cAGAuGAAGAcgGGGaCCC-CgagGGACCAGa -3'
miRNA:   3'- uUCU-CUUCU--CCC-GGGuGaa-CCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 103788 0.66 0.851848
Target:  5'- uGGGGGcgcugccuccAGGGGGCCCACUUccACCGc -3'
miRNA:   3'- uUCUCU----------UCUCCCGGGUGAAccUGGUc -5'
9452 5' -56.2 NC_002531.1 + 109812 0.66 0.851848
Target:  5'- uAGAGGcccuGGA-GGCCCGUUaGGACCAGg -3'
miRNA:   3'- uUCUCU----UCUcCCGGGUGAaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118290 0.66 0.835294
Target:  5'- uGGAcccGAAGAaGGCUCAagUGGACCAGg -3'
miRNA:   3'- uUCU---CUUCUcCCGGGUgaACCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 15861 0.66 0.826722
Target:  5'- cGGAGAGGAGGuGCCCACaaa-GCCu- -3'
miRNA:   3'- uUCUCUUCUCC-CGGGUGaaccUGGuc -5'
9452 5' -56.2 NC_002531.1 + 119496 0.67 0.781244
Target:  5'- --aAGGAGAaGGCCCugagGGACCAGa -3'
miRNA:   3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119181 0.67 0.781244
Target:  5'- --aAGGAGAaGGCCCugagGGACCAGa -3'
miRNA:   3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119148 0.67 0.781244
Target:  5'- --aAGGAGAaGGCCCugagGGACCAGa -3'
miRNA:   3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118956 0.67 0.781244
Target:  5'- --aAGGAGAaGGCCCugagGGACCAGa -3'
miRNA:   3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118698 0.67 0.781244
Target:  5'- --aAGGAGAaGGCCCugagGGACCAGa -3'
miRNA:   3'- uucUCUUCUcCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118579 0.67 0.771688
Target:  5'- cAGGuGcucAAGAgGGGCCCGag-GGACCAGa -3'
miRNA:   3'- -UUCuC---UUCU-CCCGGGUgaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118382 0.67 0.771688
Target:  5'- cAAGAGGuccccGAGGGaCCAaagGGGCCAGa -3'
miRNA:   3'- -UUCUCUu----CUCCCgGGUgaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118923 0.67 0.771688
Target:  5'- --aAGGAGAaGGCCC-CgagGGACCAGa -3'
miRNA:   3'- uucUCUUCUcCCGGGuGaa-CCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118665 0.67 0.771688
Target:  5'- --aAGGAGAaGGCCC-CgagGGACCAGa -3'
miRNA:   3'- uucUCUUCUcCCGGGuGaa-CCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119563 0.67 0.762002
Target:  5'- ----cAAGAGGGCCCugagGGACUAGa -3'
miRNA:   3'- uucucUUCUCCCGGGugaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 100758 0.67 0.762002
Target:  5'- uGGuGggGAGGGUCCACU-GGugUu- -3'
miRNA:   3'- uUCuCuuCUCCCGGGUGAaCCugGuc -5'
9452 5' -56.2 NC_002531.1 + 119247 0.68 0.752195
Target:  5'- --aAGA--GGGGCCCGag-GGACCAGg -3'
miRNA:   3'- uucUCUucUCCCGGGUgaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119442 0.68 0.752195
Target:  5'- cAGGuGcucAAGAgGGGCCCGag-GGACCAGg -3'
miRNA:   3'- -UUCuC---UUCU-CCCGGGUgaaCCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 118877 0.68 0.746256
Target:  5'- uGAGAGAccAGAGgggccugaaggagaaGGCCC-CgagGGACCAGa -3'
miRNA:   3'- -UUCUCU--UCUC---------------CCGGGuGaa-CCUGGUC- -5'
9452 5' -56.2 NC_002531.1 + 119612 0.68 0.736276
Target:  5'- cGAGGGAccagaagggccugaaGGAGauaGCCCAgaUGGGCCAGg -3'
miRNA:   3'- -UUCUCU---------------UCUCc--CGGGUgaACCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.