miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9477 5' -47.9 NC_002531.1 + 81903 0.65 0.998926
Target:  5'- gGCcGCAaAGAGCGCCUUAaccacucgagucauGGCUAg- -3'
miRNA:   3'- gUGaUGUcUCUCGUGGAAU--------------UCGAUag -5'
9477 5' -47.9 NC_002531.1 + 87264 0.66 0.998761
Target:  5'- aGCUACAGAGAGgaGCCUaaaAAGU--UCa -3'
miRNA:   3'- gUGAUGUCUCUCg-UGGAa--UUCGauAG- -5'
9477 5' -47.9 NC_002531.1 + 58493 0.66 0.998736
Target:  5'- aCACUuuuAUGGGGGGCAUCUUGGGgCUugcuccaGUCg -3'
miRNA:   3'- -GUGA---UGUCUCUCGUGGAAUUC-GA-------UAG- -5'
9477 5' -47.9 NC_002531.1 + 8926 0.66 0.998487
Target:  5'- cCAC-ACAGGGGGCAUU---GGCUGUg -3'
miRNA:   3'- -GUGaUGUCUCUCGUGGaauUCGAUAg -5'
9477 5' -47.9 NC_002531.1 + 56993 0.66 0.998487
Target:  5'- aGCUugGCuGAGAGCACCccgGGGCa--- -3'
miRNA:   3'- gUGA--UGuCUCUCGUGGaa-UUCGauag -5'
9477 5' -47.9 NC_002531.1 + 15891 0.66 0.998487
Target:  5'- ---aACAGAGAGUGCCUUAAagacCUGUg -3'
miRNA:   3'- gugaUGUCUCUCGUGGAAUUc---GAUAg -5'
9477 5' -47.9 NC_002531.1 + 87213 0.66 0.998487
Target:  5'- -uCUAgGGGGAGCucGCCUUcuaacAGGCUGUg -3'
miRNA:   3'- guGAUgUCUCUCG--UGGAA-----UUCGAUAg -5'
9477 5' -47.9 NC_002531.1 + 76063 0.66 0.998164
Target:  5'- -uUUACAgGAGAGUACCUUGcGGCUu-- -3'
miRNA:   3'- guGAUGU-CUCUCGUGGAAU-UCGAuag -5'
9477 5' -47.9 NC_002531.1 + 122126 0.67 0.996233
Target:  5'- uCGCUGCAGAGGGCcgagagcaaGCCgucUGAGUa--- -3'
miRNA:   3'- -GUGAUGUCUCUCG---------UGGa--AUUCGauag -5'
9477 5' -47.9 NC_002531.1 + 58612 0.67 0.995551
Target:  5'- cCACUGCGGGGuggcAGCACg-UGAGCaUAUUa -3'
miRNA:   3'- -GUGAUGUCUC----UCGUGgaAUUCG-AUAG- -5'
9477 5' -47.9 NC_002531.1 + 28334 0.67 0.995551
Target:  5'- ---aACuGAGAuuGUAUCUUAAGCUAUCc -3'
miRNA:   3'- gugaUGuCUCU--CGUGGAAUUCGAUAG- -5'
9477 5' -47.9 NC_002531.1 + 88365 0.68 0.99288
Target:  5'- aGCUAUGGAGAccuGCGCCUcuuuUAGGCUu-- -3'
miRNA:   3'- gUGAUGUCUCU---CGUGGA----AUUCGAuag -5'
9477 5' -47.9 NC_002531.1 + 13234 0.68 0.989061
Target:  5'- gGCUGCAGGGGGCuuGCCagUAAGUg--- -3'
miRNA:   3'- gUGAUGUCUCUCG--UGGa-AUUCGauag -5'
9477 5' -47.9 NC_002531.1 + 225 0.69 0.985738
Target:  5'- gCACgGCAGAGAGC-CCUUuuacccuCUGUCa -3'
miRNA:   3'- -GUGaUGUCUCUCGuGGAAuuc----GAUAG- -5'
9477 5' -47.9 NC_002531.1 + 44103 0.69 0.98381
Target:  5'- uCACUgGCAGAaAGCACUUUAGGgUGUUc -3'
miRNA:   3'- -GUGA-UGUCUcUCGUGGAAUUCgAUAG- -5'
9477 5' -47.9 NC_002531.1 + 48854 0.69 0.979371
Target:  5'- cUACUAUAGAGAcGgGCC-UGAGCUAc- -3'
miRNA:   3'- -GUGAUGUCUCU-CgUGGaAUUCGAUag -5'
9477 5' -47.9 NC_002531.1 + 68799 0.7 0.974088
Target:  5'- aACUGCcccuacAGAGCACCUUAAGUaaggAUCu -3'
miRNA:   3'- gUGAUGuc----UCUCGUGGAAUUCGa---UAG- -5'
9477 5' -47.9 NC_002531.1 + 23240 0.7 0.97351
Target:  5'- cCACcACGGAGAGUACCUUGAauuuucaaauauCUAUCc -3'
miRNA:   3'- -GUGaUGUCUCUCGUGGAAUUc-----------GAUAG- -5'
9477 5' -47.9 NC_002531.1 + 101624 0.7 0.967883
Target:  5'- gGCUugAGGGAGCGCCau-AGUUGc- -3'
miRNA:   3'- gUGAugUCUCUCGUGGaauUCGAUag -5'
9477 5' -47.9 NC_002531.1 + 126709 0.7 0.964415
Target:  5'- uGCUGCAGAGGGUAUgUgauuAGUUAUUa -3'
miRNA:   3'- gUGAUGUCUCUCGUGgAau--UCGAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.