Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9488 | 3' | -56.2 | NC_002531.1 | + | 74467 | 0.66 | 0.875167 |
Target: 5'- cGCAgCAGCACCGCucuGCAgUGGaccacuuugUUUCCa -3' miRNA: 3'- aUGUgGUCGUGGUGu--CGU-GCC---------AGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 101099 | 0.66 | 0.867708 |
Target: 5'- gAUugCAGUGCCugGGUACuGUUUUCu -3' miRNA: 3'- aUGugGUCGUGGugUCGUGcCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 44070 | 0.66 | 0.860029 |
Target: 5'- -----aAGCuGCCACGGcCACGGUgUCCa -3' miRNA: 3'- auguggUCG-UGGUGUC-GUGCCAgAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 82762 | 0.66 | 0.84404 |
Target: 5'- aGCAUCGGCucCCugAGCAUGGUg--- -3' miRNA: 3'- aUGUGGUCGu-GGugUCGUGCCAgagg -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 10184 | 0.66 | 0.835743 |
Target: 5'- uUGCACCAGCgGCCcguuaaaagugGCAGCaacuuguugACGGguuucuagaUCUCCa -3' miRNA: 3'- -AUGUGGUCG-UGG-----------UGUCG---------UGCC---------AGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 90080 | 0.67 | 0.827255 |
Target: 5'- cACAuCCAGC-CgCGCGGCGCGuUCgUCCa -3' miRNA: 3'- aUGU-GGUCGuG-GUGUCGUGCcAG-AGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 23741 | 0.67 | 0.827255 |
Target: 5'- aACugCAGCaaugGCCACAGuCACcG-CUCCu -3' miRNA: 3'- aUGugGUCG----UGGUGUC-GUGcCaGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 120395 | 0.67 | 0.827255 |
Target: 5'- --aGCCAGUGCCcguACGGCACGuGUUUUUa -3' miRNA: 3'- augUGGUCGUGG---UGUCGUGC-CAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 69785 | 0.67 | 0.827255 |
Target: 5'- cGCACCAGCAgCAcCAGCACuGcaucuacaUCCa -3' miRNA: 3'- aUGUGGUCGUgGU-GUCGUGcCag------AGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 103664 | 0.67 | 0.818584 |
Target: 5'- aGCACCAGCACCAgagcCAGCACc------ -3' miRNA: 3'- aUGUGGUCGUGGU----GUCGUGccagagg -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 4149 | 0.67 | 0.818584 |
Target: 5'- -uUAUCAGC-CaGCAGCugGGUUUCUg -3' miRNA: 3'- auGUGGUCGuGgUGUCGugCCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 100951 | 0.67 | 0.813296 |
Target: 5'- gUAC-CCAGgCACUGCAaucguauaccacuguGCACaGUCUCCa -3' miRNA: 3'- -AUGuGGUC-GUGGUGU---------------CGUGcCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 74080 | 0.67 | 0.809737 |
Target: 5'- cACACCugGGCugagagucuuGCUGCAGCACGGg--CCa -3' miRNA: 3'- aUGUGG--UCG----------UGGUGUCGUGCCagaGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 87987 | 0.67 | 0.799814 |
Target: 5'- aUACAacaaCAGCaucacugaaacucGCCAuacCAGCACGGUCgauagCCa -3' miRNA: 3'- -AUGUg---GUCG-------------UGGU---GUCGUGCCAGa----GG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 84890 | 0.67 | 0.782234 |
Target: 5'- uUAC-CCAGCACCAC-GUugGGguagagCCg -3' miRNA: 3'- -AUGuGGUCGUGGUGuCGugCCaga---GG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 42923 | 0.67 | 0.782234 |
Target: 5'- aUGC-CCAGUuauucuaugcuGCCGguGCGgGGUUUCCa -3' miRNA: 3'- -AUGuGGUCG-----------UGGUguCGUgCCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 14027 | 0.68 | 0.772775 |
Target: 5'- cACACUggaggucccgAGCAcguggggguacuCCAgGGCACaGGUCUCCu -3' miRNA: 3'- aUGUGG----------UCGU------------GGUgUCGUG-CCAGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 35677 | 0.68 | 0.772775 |
Target: 5'- aGCAUCuguGaCGCCACAGUuggccACGGcCUCCc -3' miRNA: 3'- aUGUGGu--C-GUGGUGUCG-----UGCCaGAGG- -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 12075 | 0.68 | 0.753477 |
Target: 5'- cGCugUGGCgGCCG-AGCugGGUCUCa -3' miRNA: 3'- aUGugGUCG-UGGUgUCGugCCAGAGg -5' |
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9488 | 3' | -56.2 | NC_002531.1 | + | 14577 | 0.69 | 0.723726 |
Target: 5'- -cCACCAGCucaCGCAGCugGucuagcuUCUCCa -3' miRNA: 3'- auGUGGUCGug-GUGUCGugCc------AGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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