miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9587 5' -58.4 NC_002577.1 + 161678 0.66 0.827781
Target:  5'- gGGCCGAGG--AGGCuGCgaGGuAGGAGAg -3'
miRNA:   3'- gCCGGCUCCcaUCCG-CG--UC-UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 135660 0.66 0.827781
Target:  5'- gGGCCGAGG--AGGCuGCgaGGuAGGAGAg -3'
miRNA:   3'- gCCGGCUCCcaUCCG-CG--UC-UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 1782 0.66 0.819368
Target:  5'- gGGCCuggcagggguAGGGUAGGCGCGaAGGuuGg -3'
miRNA:   3'- gCCGGc---------UCCCAUCCGCGUcUCCuuUa -5'
9587 5' -58.4 NC_002577.1 + 131831 0.66 0.819368
Target:  5'- gGGCCuggcagggguAGGGUAGGCGCGaAGGuuGg -3'
miRNA:   3'- gCCGGc---------UCCCAUCCGCGUcUCCuuUa -5'
9587 5' -58.4 NC_002577.1 + 132000 0.66 0.818517
Target:  5'- aGGCCcuaacccuacucgGGGGGgggGGGgGgGGAGGggGg -3'
miRNA:   3'- gCCGG-------------CUCCCa--UCCgCgUCUCCuuUa -5'
9587 5' -58.4 NC_002577.1 + 1614 0.66 0.818517
Target:  5'- aGGCCcuaacccuacucgGGGGGgggGGGgGgGGAGGggGg -3'
miRNA:   3'- gCCGG-------------CUCCCa--UCCgCgUCUCCuuUa -5'
9587 5' -58.4 NC_002577.1 + 142478 0.66 0.810787
Target:  5'- gGGggGGGGGgggGGGCGCGGgucgGGGAAAg -3'
miRNA:   3'- gCCggCUCCCa--UCCGCGUC----UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 154860 0.66 0.810787
Target:  5'- gGGggGGGGGgggGGGCGCGGgucgGGGAAAg -3'
miRNA:   3'- gCCggCUCCCa--UCCGCGUC----UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 123094 0.66 0.802049
Target:  5'- -cGCCGcGGGUgcgGGGC-CGGGGGGAAa -3'
miRNA:   3'- gcCGGCuCCCA---UCCGcGUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 10520 0.66 0.802049
Target:  5'- -cGCCGcGGGUgcgGGGC-CGGGGGGAAa -3'
miRNA:   3'- gcCGGCuCCCA---UCCGcGUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 1900 0.67 0.765679
Target:  5'- gGGCCcguaAGGGUAGGgGCuGGGGu--- -3'
miRNA:   3'- gCCGGc---UCCCAUCCgCGuCUCCuuua -5'
9587 5' -58.4 NC_002577.1 + 128992 0.67 0.756275
Target:  5'- uGGCCGcGGGUAcGCGCGccgaguauGGGGggGc -3'
miRNA:   3'- gCCGGCuCCCAUcCGCGU--------CUCCuuUa -5'
9587 5' -58.4 NC_002577.1 + 156776 0.67 0.746764
Target:  5'- gGGCUaAGGGgagguGGCGUAGgAGGAGGg -3'
miRNA:   3'- gCCGGcUCCCau---CCGCGUC-UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 140562 0.67 0.746764
Target:  5'- gGGCUaAGGGgagguGGCGUAGgAGGAGGg -3'
miRNA:   3'- gCCGGcUCCCau---CCGCGUC-UCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 16499 0.67 0.737154
Target:  5'- gGGCgGGGGGguuGGCcgGGAGGAAGa -3'
miRNA:   3'- gCCGgCUCCCau-CCGcgUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 124105 0.69 0.657809
Target:  5'- gGGCuUGGGGGgggGGGgGgGGAGGGAGg -3'
miRNA:   3'- gCCG-GCUCCCa--UCCgCgUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 9509 0.69 0.657809
Target:  5'- gGGCuUGGGGGgggGGGgGgGGAGGGAGg -3'
miRNA:   3'- gCCG-GCUCCCa--UCCgCgUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 2587 0.69 0.641647
Target:  5'- gGGCCuuuAGGGUgaugguugggcccuuAGGgGCAGGGGAGGc -3'
miRNA:   3'- gCCGGc--UCCCA---------------UCCgCGUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 131027 0.69 0.641647
Target:  5'- gGGCCuuuAGGGUgaugguugggcccuuAGGgGCAGGGGAGGc -3'
miRNA:   3'- gCCGGc--UCCCA---------------UCCgCGUCUCCUUUa -5'
9587 5' -58.4 NC_002577.1 + 156746 0.7 0.60728
Target:  5'- gGGCUaaGGGGGgguGGCGUAGgAGGAGGg -3'
miRNA:   3'- gCCGG--CUCCCau-CCGCGUC-UCCUUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.