Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9588 | 5' | -57.2 | NC_002577.1 | + | 163109 | 0.67 | 0.83425 |
Target: 5'- -uGCCGCCgCCGGcaAGAGUCgguCAGagaGCGCu -3' miRNA: 3'- uuCGGCGG-GGCCa-UUUCAG---GUC---UGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 161115 | 0.69 | 0.704996 |
Target: 5'- gGGGUC-CCCCGGggggcGAG-CCGGGCGCc -3' miRNA: 3'- -UUCGGcGGGGCCau---UUCaGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 161025 | 0.73 | 0.476197 |
Target: 5'- -cGCCGCCugggcgggCCGGUGGAGagcggcgCCGGACGUu -3' miRNA: 3'- uuCGGCGG--------GGCCAUUUCa------GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 160348 | 0.66 | 0.850339 |
Target: 5'- gAGGCCGCgUCGGc---GUCCgcgagaAGGCGCg -3' miRNA: 3'- -UUCGGCGgGGCCauuuCAGG------UCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 159855 | 0.76 | 0.35546 |
Target: 5'- --aCCGuCCCCGGcagGGAuGUCCGGACGCg -3' miRNA: 3'- uucGGC-GGGGCCa--UUU-CAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 158072 | 0.69 | 0.724762 |
Target: 5'- gAAGCCGCCgcggcgCCGGcUGcAGUCgAGACcGCg -3' miRNA: 3'- -UUCGGCGG------GGCC-AUuUCAGgUCUG-CG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 157418 | 0.67 | 0.83425 |
Target: 5'- cGGCaguucgauaGaCCCCGGUGAGGUCCgcagaGGGCuGCc -3' miRNA: 3'- uUCGg--------C-GGGGCCAUUUCAGG-----UCUG-CG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 157055 | 0.66 | 0.880127 |
Target: 5'- cGGUCGCUCCGGaGGGGagCGGGUGCg -3' miRNA: 3'- uUCGGCGGGGCCaUUUCagGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 151656 | 0.66 | 0.880127 |
Target: 5'- gGAGUCGCCCUuGUAGauuuugGGUuuGGGCGUu -3' miRNA: 3'- -UUCGGCGGGGcCAUU------UCAggUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 143131 | 0.71 | 0.573615 |
Target: 5'- -cGCaCGCCCCGGUcccacaCUAGGCGCa -3' miRNA: 3'- uuCG-GCGGGGCCAuuuca-GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 140283 | 0.66 | 0.880127 |
Target: 5'- cGGUCGCUCCGGaGGGGagCGGGUGCg -3' miRNA: 3'- uUCGGCGGGGCCaUUUCagGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 139919 | 0.67 | 0.83425 |
Target: 5'- cGGCaguucgauaGaCCCCGGUGAGGUCCgcagaGGGCuGCc -3' miRNA: 3'- uUCGg--------C-GGGGCCAUUUCAGG-----UCUG-CG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 139266 | 0.69 | 0.724762 |
Target: 5'- gAAGCCGCCgcggcgCCGGcUGcAGUCgAGACcGCg -3' miRNA: 3'- -UUCGGCGG------GGCC-AUuUCAGgUCUG-CG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 137483 | 0.76 | 0.35546 |
Target: 5'- --aCCGuCCCCGGcagGGAuGUCCGGACGCg -3' miRNA: 3'- uucGGC-GGGGCCa--UUU-CAGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 136989 | 0.66 | 0.850339 |
Target: 5'- gAGGCCGCgUCGGc---GUCCgcgagaAGGCGCg -3' miRNA: 3'- -UUCGGCGgGGCCauuuCAGG------UCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 136313 | 0.73 | 0.476197 |
Target: 5'- -cGCCGCCugggcgggCCGGUGGAGagcggcgCCGGACGUu -3' miRNA: 3'- uuCGGCGG--------GGCCAUUUCa------GGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 136223 | 0.69 | 0.704996 |
Target: 5'- gGGGUC-CCCCGGggggcGAG-CCGGGCGCc -3' miRNA: 3'- -UUCGGcGGGGCCau---UUCaGGUCUGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 134219 | 0.67 | 0.83425 |
Target: 5'- -uGCCGCCgCCGGcaAGAGUCgguCAGagaGCGCu -3' miRNA: 3'- uuCGGCGG-GGCCa-UUUCAG---GUC---UGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 132863 | 0.66 | 0.880127 |
Target: 5'- cAAGuuGCCCgGGUccgcGGGUCUgaAGcACGCa -3' miRNA: 3'- -UUCggCGGGgCCAu---UUCAGG--UC-UGCG- -5' |
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9588 | 5' | -57.2 | NC_002577.1 | + | 130271 | 1.1 | 0.001952 |
Target: 5'- gAAGCCGCCCCGGUAAAGUCCAGACGCg -3' miRNA: 3'- -UUCGGCGGGGCCAUUUCAGGUCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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