Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9591 | 5' | -53.8 | NC_002577.1 | + | 22977 | 0.69 | 0.890306 |
Target: 5'- -----cGGGCAAUUGGGAUauacagauGGACAGGg -3' miRNA: 3'- caagauCCUGUUGGCCCUG--------CCUGUCC- -5' |
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9591 | 5' | -53.8 | NC_002577.1 | + | 5155 | 0.72 | 0.75742 |
Target: 5'- -cUCUAGGGgAcCCGGGAaGGACuGGa -3' miRNA: 3'- caAGAUCCUgUuGGCCCUgCCUGuCC- -5' |
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9591 | 5' | -53.8 | NC_002577.1 | + | 128458 | 0.72 | 0.75742 |
Target: 5'- -cUCUAGGGgAcCCGGGAaGGACuGGa -3' miRNA: 3'- caAGAUCCUgUuGGCCCUgCCUGuCC- -5' |
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9591 | 5' | -53.8 | NC_002577.1 | + | 43472 | 0.72 | 0.75742 |
Target: 5'- ----gAGGGCGGCCGGGGCgauacauucGGACgAGGa -3' miRNA: 3'- caagaUCCUGUUGGCCCUG---------CCUG-UCC- -5' |
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9591 | 5' | -53.8 | NC_002577.1 | + | 128302 | 1.12 | 0.003787 |
Target: 5'- cGUUCUAGGACAACCGGGACGGACAGGg -3' miRNA: 3'- -CAAGAUCCUGUUGGCCCUGCCUGUCC- -5' |
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9591 | 5' | -53.8 | NC_002577.1 | + | 5312 | 1.12 | 0.003787 |
Target: 5'- cGUUCUAGGACAACCGGGACGGACAGGg -3' miRNA: 3'- -CAAGAUCCUGUUGGCCCUGCCUGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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